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L2_041_000G1_scaffold_1279

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_000G1_scaffold_1279_1
unknown

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3..80
DNA (78bp) protein (26aa)

This feature has no annotations

L2_041_000G1_scaffold_1279_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(166..966)
DNA (801bp) protein (267aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBU2_9FIRM
hypothetical protein
L2_041_000G1_scaffold_1279_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(954..1661)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47819.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_041_000G1_scaffold_1279_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1984..2187)
DNA (204bp) protein (68aa)
Hybrid cluster protein-associated redox disulfide domain n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBT9_9FIRM
Hybrid cluster protein-associated redox disulfide domain {ECO:0000313|EMBL:EGJ47817.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_041_000G1_scaffold_1279_5
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(2271..2753)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZHD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13825.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L2_041_000G1_scaffold_1279_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2925..3206)
DNA (282bp) protein (94aa)
CxxC-x17-CxxC domain-containing protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBT7_9FIRM
CxxC-x17-CxxC domain-containing protein {ECO:0000313|EMBL:EGJ47815.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_041_000G1_scaffold_1279_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3270..3935)
DNA (666bp) protein (222aa)
RNA polymerase sigma-H factor n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBT6_9FIRM
RNA polymerase sigma-H factor {ECO:0000313|EMBL:EGJ47814.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative RNA polymerase sigma factor
L2_041_000G1_scaffold_1279_8
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(3993..5360)
DNA (1368bp) protein (456aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YE01_9FIRM
L2_041_000G1_scaffold_1279_9
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5803..6183)
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Clostridium thermocellum RepID=D1NMZ5_CLOTM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABN52716.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L2_041_000G1_scaffold_1279_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6202..7275)
DNA (1074bp) protein (358aa)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000256|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00016};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ruvB; Holliday junction ATP-dependent DNA helicase RuvB (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvB n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBT3_9FIRM
L2_041_000G1_scaffold_1279_11
Desulfosporosinus youngiae, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7380..8462)
DNA (1083bp) protein (361aa)
Putative uncharacterized protein n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5Y4G8_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ89566.1}; TaxID=768710 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus youngiae DSM 17734.;"
hypothetical protein
L2_041_000G1_scaffold_1279_12
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(8565..8897)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YDZ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13817.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L2_041_000G1_scaffold_1279_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8914..9273)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47810.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_041_000G1_scaffold_1279_14
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9285..9794)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VYB8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO59546.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L2_041_000G1_scaffold_1279_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9796..10125)
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47809.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_041_000G1_scaffold_1279_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10194..10802)
DNA (609bp) protein (203aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ruvA; Holliday junction ATP-dependent DNA helicase RuvA (EC:3.6.1.-)
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBT0_9FIRM
L2_041_000G1_scaffold_1279_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10984..11505)
DNA (522bp) protein (174aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ruvC; crossover junction endodeoxyribonuclease RuvC (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBS8_9FIRM
L2_041_000G1_scaffold_1279_18
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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11649..12176
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JLD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS34776.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
hypothetical protein
L2_041_000G1_scaffold_1279_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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12302..13519
DNA (1218bp) protein (406aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
LL-diaminopimelate aminotransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDR0_9FIRM
L,L-diaminopimelate aminotransferase
L2_041_000G1_scaffold_1279_20
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

Not on your lists

13712..14758
DNA (1047bp) protein (349aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
D-alanine--D-alanine ligase (EC:6.3.2.4)
D-alanine--D-alanine ligase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D510_9FIRM
L2_041_000G1_scaffold_1279_21
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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14755..15498
DNA (744bp) protein (248aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=2 Tax=Oscillibacter RepID=U2Q9D4_9FIRM
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:ERK59425.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
peptidase M15
L2_041_000G1_scaffold_1279_22
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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15495..17573
DNA (2079bp) protein (693aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
Alanine racemase n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5D4V5_9FIRM
alanine racemase
L2_041_000G1_scaffold_1279_23
unknown

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comp(17518..18171)
DNA (654bp) protein (218aa)

This feature has no annotations

L2_041_000G1_scaffold_1279_24
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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comp(18194..18775)
DNA (582bp) protein (194aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
Tyrosine--tRNA ligase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XUE6_9FIRM
hypothetical protein
Displaying 24 items

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