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L2_041_124G1_scaffold_4

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Displaying items 1-30 of 342 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_124G1_scaffold_4_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..133
DNA (132bp) protein (44aa)
D-serine deaminase transcriptional activator n=1 Tax=Escherichia coli UMEA 3703-1 RepID=T9RVX9_ECOLX
DNA-binding transcriptional regulator DsdC
D-serine deaminase transcriptional activator {ECO:0000313|EMBL:EOV57149.1}; TaxID=1182671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE64.;"
L2_041_124G1_scaffold_4_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(383..1315)
DNA (933bp) protein (311aa)
Inner membrane protein yfdC n=15 Tax=Escherichia coli RepID=L3B4P4_ECOLX
yfdC; hypothetical protein
Inner membrane protein yfdC {ECO:0000313|EMBL:EZJ39690.1}; TaxID=1444258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C3.;"
L2_041_124G1_scaffold_4_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1609..2364
DNA (756bp) protein (252aa)
Lipoprotein vacJ n=381 Tax=Escherichia RepID=Q6KCW9_ECOLX
vacJ; Lipoprotein vacJ
MlaA {ECO:0000313|EMBL:EHU38653.1}; TaxID=868139 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2B.;"
L2_041_124G1_scaffold_4_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2426..3766)
DNA (1341bp) protein (447aa)
Long-chain fatty acid transport protein n=178 Tax=Escherichia coli RepID=FADL_ECOL6
fadL; long-chain fatty acid outer membrane
Outer membrane transport family protein {ECO:0000313|EMBL:EZJ50771.1}; TaxID=1444228 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C2.;"
L2_041_124G1_scaffold_4_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4138..4422
DNA (285bp) protein (95aa)
UPF0381 protein YfcZ n=679 Tax=Escherichia RepID=YFCZ_ECOL6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDX90290.1}; TaxID=1444181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-222-05_S3_C3.;"
L2_041_124G1_scaffold_4_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4603..5913
DNA (1311bp) protein (437aa)
3-ketoacyl-CoA thiolase {ECO:0000256|HAMAP-Rule:MF_01618, ECO:0000256|SAAS:SAAS00022530}; EC=2.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01618, ECO:0000256|SAAS:SAAS00022453};; ACSs {ECO:0000256|HAMAP-Rule:MF_01618}; Acetyl-CoA acyltransferase {ECO:0000256|HAMAP-Rule:MF_01618}; Acyl-CoA ligase {ECO:0000256|HAMAP-Rule:MF_01618}; Beta-ketothiolase {ECO:0000256|HAMAP-Rule:MF_01618}; Fatty acid oxidation complex subunit beta {ECO:0000256|HAMAP-Rule:MF_01618}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
fadI; 3-ketoacyl-CoA thiolase (EC:2.3.1.16)
3-ketoacyl-CoA thiolase n=18 Tax=Escherichia coli RepID=L3B6R7_ECOLX
L2_041_124G1_scaffold_4_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5913..8057
DNA (2145bp) protein (715aa)
Fatty acid oxidation complex subunit alpha {ECO:0000255|HAMAP-Rule:MF_01617}; Includes:; Enoyl-CoA hydratase/3-hydroxybutyryl-CoA epimerase {ECO:0000255|HAMAP-Rule:MF_01617}; EC=4.2.1.17 {ECO:0000255|HAMAP-Rule:MF_01617};; EC=5.1.2.3 {ECO:0000255|HAMAP-Rule:MF_01617};; Includes:; 3-hydroxyacyl-CoA dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01617}; EC=1.1.1.35 {ECO:0000255|HAMAP-Rule:MF_01617};; TaxID=585397 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O81 (strain ED1a).;"
fadJ; multifunctional fatty acid oxidation complex subunit alpha (EC:1.1.1.35 4.2.1.17 5.1.2.3 5.3.3.8)
Fatty acid oxidation complex subunit alpha n=21 Tax=Escherichia coli RepID=L3B4N7_ECOLX
L2_041_124G1_scaffold_4_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8260..8745
DNA (486bp) protein (162aa)
Phosphohistidine phosphatase {ECO:0000313|EMBL:CAV17822.1}; EC=3.1.3.- {ECO:0000313|EMBL:CAV17822.1};; TaxID=585397 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O81 (strain ED1a).;"
Phosphohistidine phosphatase sixA n=21 Tax=Escherichia coli RepID=L3B6B1_ECOLX
sixA; phosphohistidine phosphatase
L2_041_124G1_scaffold_4_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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9312..9878
DNA (567bp) protein (189aa)
Fimbrial protein n=246 Tax=Escherichia RepID=D5D7V6_ECOKI
fimbrial protein
Hypothetical fimbrial-like protein YfcV precusor {ECO:0000313|EMBL:CAE55844.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L2_041_124G1_scaffold_4_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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9959..12607
DNA (2649bp) protein (883aa)
Fimbrial outer membrane usher protein PapC n=10 Tax=Escherichia coli RepID=L3BN35_ECOLX
Putative outer membrane usher YfcU {ECO:0000313|EMBL:ABE08089.1}; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
yfcU; outer membrane usher YfcU
L2_041_124G1_scaffold_4_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12627..13379
DNA (753bp) protein (251aa)
Fimbrial chaperone yfcS n=142 Tax=Escherichia coli RepID=G7RFF9_ECOC2
yfcS; fimbrial chaperone yfcS
Hypothetical fimbrial chaperone YfcS precusor {ECO:0000313|EMBL:CAE55842.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L2_041_124G1_scaffold_4_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13396..13899
DNA (504bp) protein (168aa)
Fimbrial protein n=159 Tax=Escherichia RepID=D5D7V3_ECOKI
hypothetical protein
Putative Yfc fimbriae subunit YfcR {ECO:0000313|EMBL:ABE08087.1}; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
L2_041_124G1_scaffold_4_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13896..14375
DNA (480bp) protein (160aa)
Fimbrial protein n=102 Tax=Escherichia RepID=D5D7V2_ECOKI
yfcQ; fimbrial-like adhesin exported protein
Putative fimbrial-like adhesin exported protein {ECO:0000313|EMBL:CAR03760.1}; TaxID=585035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O45:K1 (strain S88 / ExPEC).;"
L2_041_124G1_scaffold_4_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14372..14899
DNA (528bp) protein (176aa)
Fimbrial adhesin protein n=21 Tax=Escherichia coli RepID=L3B5F9_ECOLX
yfcP; Yfc fimbriae subunit YfcP
Fimbrial adhesin protein {ECO:0000313|EMBL:EQX27025.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
L2_041_124G1_scaffold_4_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14901..15743
DNA (843bp) protein (281aa)
Uncharacterized protein n=96 Tax=Escherichia RepID=B7MG96_ECO45
hypothetical protein
Fimbrial adhesin YfcO {ECO:0000313|EMBL:EQX27024.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
L2_041_124G1_scaffold_4_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16063..16614)
DNA (552bp) protein (184aa)
UPF0115 protein YfcN n=794 Tax=Enterobacteriaceae RepID=YFCN_ECO24
hypothetical protein
UPF0115 protein YfcN {ECO:0000256|HAMAP-Rule:MF_01042}; TaxID=1446583 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O145:H25 str. 07-3858.;"
L2_041_124G1_scaffold_4_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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16780..17712
DNA (933bp) protein (311aa)
50S ribosomal protein L3 glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02125}; Short=L3 MTase {ECO:0000256|HAMAP-Rule:MF_02125};; EC=2.1.1.298 {ECO:0000256|HAMAP-Rule:MF_02125};; N5-glutamine methyltransferase PrmB {ECO:0000256|HAMAP-Rule:MF_02125}; TaxID=1444223 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-267-03_S4_C1.;"
50S ribosomal protein L3 glutamine methyltransferase n=164 Tax=Enterobacteriaceae RepID=B7LLE0_ESCF3
prmB; ribosomal large subunit L3 protein glutamine methyltransferase
L2_041_124G1_scaffold_4_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17747..18832
DNA (1086bp) protein (362aa)
aroC; chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1281213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3200-1.;"
Chorismate synthase n=644 Tax=Enterobacteriaceae RepID=AROC_ECO57
L2_041_124G1_scaffold_4_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18836..19660
DNA (825bp) protein (275aa)
Penicillin-insensitive murein endopeptidase {ECO:0000256|HAMAP-Rule:MF_01623, ECO:0000256|SAAS:SAAS00067071}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01623, ECO:0000256|SAAS:SAAS00067077};; D-alanyl-D-alanine-endopeptidase {ECO:0000256|HAMAP-Rule:MF_01623}; Flags: Precursor;; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
Penicillin-insensitive murein endopeptidase n=85 Tax=Escherichia coli RepID=MEPA_ECOL5
mepA; penicillin-insensitive murein endopeptidase
L2_041_124G1_scaffold_4_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19660..20469
DNA (810bp) protein (270aa)
Inner membrane protein yfcA n=241 Tax=Escherichia RepID=E2QPI8_ECOLX
yfcA; hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:ACB17773.1}; TaxID=439855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain SMS-3-5 / SECEC).;"
L2_041_124G1_scaffold_4_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20469..21017
DNA (549bp) protein (183aa)
Uncharacterized protein n=104 Tax=Escherichia RepID=B7MXK5_ECO81
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAR08821.1}; TaxID=585397 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O81 (strain ED1a).;"
L2_041_124G1_scaffold_4_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21051..21329
DNA (279bp) protein (93aa)
Uncharacterized protein yfcL n=393 Tax=Escherichia RepID=E2QPI6_ECOLX
yfcL; hypothetical protein
Putative cytoplasmic protein {ECO:0000313|EMBL:EGI50152.1}; TaxID=656393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H299.;"
L2_041_124G1_scaffold_4_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(21450..23456)
DNA (2007bp) protein (669aa)
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC n=32 Tax=Escherichia coli RepID=E9U7Q7_ECOLX
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000256|HAMAP-Rule:MF_01102, ECO:0000256|SAAS:SAAS00084295}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000256|HAMAP-Rule:MF_01102};; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
mnmC; 5-methylaminomethyl-2-thiouridine methyltransferase
L2_041_124G1_scaffold_4_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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23615..24835
DNA (1221bp) protein (407aa)
Beta-ketoacyl-acyl-carrier-protein synthase I {ECO:0000313|EMBL:EFJ75057.1}; EC=2.3.1.41 {ECO:0000313|EMBL:EFJ75057.1};; TaxID=749549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 198-1.;"
3-oxoacyl-[acyl-carrier-protein] synthase 1 n=1015 Tax=Enterobacteriaceae RepID=FABB_ECOL6
fabB; 3-oxoacyl-ACP synthase
L2_041_124G1_scaffold_4_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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25100..26278
DNA (1179bp) protein (393aa)
UPF0226 membrane protein A13O_02645 n=21 Tax=Escherichia coli RepID=L3B4H6_ECOLX
UPF0226 membrane protein ECONIH1_13505 {ECO:0000256|HAMAP-Rule:MF_01118}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
yfcJ; hypothetical protein
L2_041_124G1_scaffold_4_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(26275..27270)
DNA (996bp) protein (332aa)
Flagellar regulator flk n=139 Tax=Escherichia coli RepID=B7MXZ8_ECO81
cell division protein
Flagellar regulator flk {ECO:0000256|PIRNR:PIRNR020588}; Fluke {ECO:0000256|PIRNR:PIRNR020588}; TaxID=431946 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O150:H5 (strain SE15).;"
L2_041_124G1_scaffold_4_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27369..28505
DNA (1137bp) protein (379aa)
Erythronate-4-phosphate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01825}; EC=1.1.1.290 {ECO:0000255|HAMAP-Rule:MF_01825};; TaxID=405955 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O1:K1 / APEC.;"
Erythronate-4-phosphate dehydrogenase n=145 Tax=Escherichia RepID=PDXB_ECO45
pdxB; erythronate-4-phosphate dehydrogenase
L2_041_124G1_scaffold_4_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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28571..29584
DNA (1014bp) protein (338aa)
USG-1 protein n=25 Tax=Escherichia coli RepID=L3B691_ECOLX
usg; USG-1 protein
Putative semialdehyde dehydrogenase {ECO:0000313|EMBL:CKI29766.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L2_041_124G1_scaffold_4_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29584..30396
DNA (813bp) protein (271aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
tRNA pseudouridine synthase A n=22 Tax=Escherichia coli RepID=L3B5E6_ECOLX
L2_041_124G1_scaffold_4_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30479..31138
DNA (660bp) protein (220aa)
Protein dedA n=357 Tax=Escherichia RepID=E2QPH8_ECOLX
dedA; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI55734.1}; TaxID=431946 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O150:H5 (strain SE15).;"
Displaying items 1-30 of 342 in total

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