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L2_041_124G1_scaffold_25

Search features with annotation key words

Displaying items 1-30 of 178 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_124G1_scaffold_25_1
unknown

Not on your lists

comp(3..128)
DNA (126bp) protein (42aa)

This feature has no annotations

L2_041_124G1_scaffold_25_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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850..2820
DNA (1971bp) protein (657aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=D5Q547_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCL00970.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
hypothetical protein
L2_041_124G1_scaffold_25_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2813..5053
DNA (2241bp) protein (747aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
UvrD/REP helicase n=6 Tax=Clostridium difficile RepID=D5Q548_CLODI
putative helicase, superfamily 1, UvrD-family
L2_041_124G1_scaffold_25_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5123..6067
DNA (945bp) protein (315aa)
PD-(D/E)XK nuclease superfamily protein n=1 Tax=Clostridium difficile CD18 RepID=T2UWB7_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL29116.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_041_124G1_scaffold_25_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6057..9527
DNA (3471bp) protein (1157aa)
ATP-dependent helicase/deoxyribonuclease subunit B {ECO:0000256|HAMAP-Rule:MF_01452, ECO:0000256|SAAS:SAAS00044573}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01452, ECO:0000256|SAAS:SAAS00044602};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01452, ECO:0000256|SAAS:SAAS00044578};; ATP-dependent helicase/nuclease AddB {ECO:0000256|HAMAP-Rule:MF_01452}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
addB; ATP-dependent nuclease subunit B (EC:3.6.1.-)
ATP-dependent helicase/deoxyribonuclease subunit B n=1 Tax=Clostridium difficile CD160 RepID=T3DHS6_CLODI
L2_041_124G1_scaffold_25_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9524..13384
DNA (3861bp) protein (1287aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00145970};; ATP-dependent helicase/nuclease AddA {ECO:0000256|HAMAP-Rule:MF_01451}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
addA; ATP-dependent nuclease subunit A (EC:3.6.1.-)
ATP-dependent helicase/nuclease subunit A n=1 Tax=Clostridium difficile CD160 RepID=T3DH84_CLODI
L2_041_124G1_scaffold_25_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13406..14605
DNA (1200bp) protein (400aa)
Exonuclease SbcCD, D subunit n=1 Tax=Clostridium difficile CD160 RepID=T3DDV4_CLODI
Exonuclease SbcCD, D subunit {ECO:0000313|EMBL:EQF26069.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
nuclease subunit D
L2_041_124G1_scaffold_25_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14607..18134
DNA (3528bp) protein (1176aa)
RecF/RecN/SMC N-terminal domain protein n=6 Tax=Clostridium difficile RepID=D5Q553_CLODI
Nuclease SbcCD subunit C {ECO:0000313|EMBL:CCL00976.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
sbcC; Nuclease SbcCD subunit C
L2_041_124G1_scaffold_25_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18288..19538
DNA (1251bp) protein (417aa)
Transporter associated domain protein n=2 Tax=Clostridium difficile RepID=T4L055_CLODI
modulator of ions transport
Putative membrane protein {ECO:0000313|EMBL:CCL29121.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_041_124G1_scaffold_25_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19642..20691
DNA (1050bp) protein (350aa)
Putative sporulation integral membrane protein n=1 Tax=Clostridium difficile T23 RepID=U3Y3V0_CLODI
hypothetical protein
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:EQE67746.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_041_124G1_scaffold_25_11
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20799..22022
DNA (1224bp) protein (408aa)
Peptidase T {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064331}; EC=3.4.11.4 {ECO:0000256|HAMAP-Rule:MF_00550, ECO:0000256|SAAS:SAAS00064282};; Aminotripeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; Tripeptide aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00550}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
Peptidase T n=1 Tax=Clostridium bifermentans ATCC 19299 RepID=T4W4F6_CLOBI
pepT; peptidase T
L2_041_124G1_scaffold_25_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22179..22748)
DNA (570bp) protein (190aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
Phosphodiesterase, MJ0936 family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DF32_CLODI
phosphodiesterase
L2_041_124G1_scaffold_25_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22777..23577)
DNA (801bp) protein (267aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Clostridium difficile CD160 RepID=T3DHV4_CLODI
inorganic polyphosphate/ATP-NAD kinase
L2_041_124G1_scaffold_25_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23706..24611
DNA (906bp) protein (302aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Pseudouridine synthase n=107 Tax=Clostridium difficile RepID=G6BVQ6_CLODI
pseudouridylate synthase
L2_041_124G1_scaffold_25_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24646..25650
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Clostridium difficile E19 RepID=U3YCT6_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL21184.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_041_124G1_scaffold_25_16
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25732..25959)
DNA (228bp) protein (76aa)
Acyl carrier protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G1D0_9FIRM
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
acyl carrier protein
L2_041_124G1_scaffold_25_17
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26125..26553
DNA (429bp) protein (143aa)
Uncharacterized protein n=2 Tax=Clostridium sordellii RepID=T0CVJ5_CLOSO
Uncharacterized protein {ECO:0000313|EMBL:CEK31160.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
L2_041_124G1_scaffold_25_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26597..26815
DNA (219bp) protein (73aa)
Uncharacterized protein n=44 Tax=Clostridium difficile RepID=C9XNF9_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK93343.1}; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
L2_041_124G1_scaffold_25_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26909..27082
DNA (174bp) protein (58aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000365756E
Putative membrane protein {ECO:0000313|EMBL:EQF26127.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
hypothetical protein
L2_041_124G1_scaffold_25_20
[Clostridium] bifermentans, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27129..27332
DNA (204bp) protein (68aa)
Putative membrane protein n=2 Tax=Clostridium bifermentans RepID=T4VK05_CLOBI
Putative membrane protein {ECO:0000313|EMBL:EQK47750.1}; TaxID=1233170 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] bifermentans ATCC 19299.;"
hypothetical protein
L2_041_124G1_scaffold_25_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27536..28552
DNA (1017bp) protein (339aa)
Helix-turn-helix family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DI16_CLODI
Helix-turn-helix family protein {ECO:0000313|EMBL:EQF26096.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
LacI family transcriptional regulator
L2_041_124G1_scaffold_25_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28751..29167)
DNA (417bp) protein (139aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=D5Q578_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EFH06933.1}; TaxID=525259 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile NAP08.;"
hypothetical protein
L2_041_124G1_scaffold_25_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29371..30237
DNA (867bp) protein (289aa)
Uncharacterized protein n=4 Tax=Clostridium difficile RepID=U3ULG2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCK89862.1}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
hypothetical protein
L2_041_124G1_scaffold_25_24
unknown

Not on your lists

30389..30505
DNA (117bp) protein (39aa)

This feature has no annotations

L2_041_124G1_scaffold_25_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30606..30833
DNA (228bp) protein (76aa)
Putative copper-transporting P-type ATPase {ECO:0000313|EMBL:CCK94560.1}; EC=3.6.3.4 {ECO:0000313|EMBL:CCK94560.1};; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
Copper-translocating P-type ATPase n=1 Tax=Clostridium difficile CD160 RepID=T3DA83_CLODI
copper-transporting P-type ATPase
L2_041_124G1_scaffold_25_26
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30878..31843
DNA (966bp) protein (322aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AXX1_CLOA9
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AFS77595.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
L2_041_124G1_scaffold_25_27
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31845..32645
DNA (801bp) protein (267aa)
ABC-2 type transporter n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=A8MGU3_ALKOO
ABC-2 type transporter
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (strain OhILAs) (Clostridium oremlandii; (strain OhILAs)).;"
L2_041_124G1_scaffold_25_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33324..34511
DNA (1188bp) protein (396aa)
Uncharacterized protein n=126 Tax=Clostridium difficile RepID=T3I125_CLODC
cdeC; exosporium cysteine rich protein
Uncharacterized protein {ECO:0000313|EMBL:EQE67778.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_041_124G1_scaffold_25_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34598..35926)
DNA (1329bp) protein (443aa)
MatE family protein n=185 Tax=Clostridium difficile RepID=T3I270_CLODC
polysaccharide biosynthesis/sporulation protein
MatE family protein {ECO:0000313|EMBL:EQG77869.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_041_124G1_scaffold_25_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35981..36775)
DNA (795bp) protein (265aa)
histidinol phosphatase/hydrolase (EC:3.1.3.15)
Histidinol phosphate phosphatase, HisJ family protein n=1 Tax=Clostridium difficile CD160 RepID=T3DE19_CLODI
Histidinol phosphate phosphatase, HisJ family protein {ECO:0000313|EMBL:EQF26109.1}; TaxID=1151292 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD160.;"
Displaying items 1-30 of 178 in total

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