ggKbase home page

L2_041_124G1_scaffold_254

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_041_124G1_scaffold_254_1
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..284)
DNA (282bp) protein (94aa)
Pentapeptide repeat protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JJ21_CLOBU
Quinolone resistance protein {ECO:0000313|EMBL:KJZ86831.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
pentapeptide repeat protein
L2_041_124G1_scaffold_254_2
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(402..1292)
DNA (891bp) protein (297aa)
Cation efflux family protein n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IGK0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ86825.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
cation efflux protein
L2_041_124G1_scaffold_254_3
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1573..3255)
DNA (1683bp) protein (561aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z9K1_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ86823.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
putative lipoprotein
L2_041_124G1_scaffold_254_4
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3465..4274
DNA (810bp) protein (270aa)
Carbohydrate esterase, family 1 n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J9Z9_CLOBU
Carbohydrate esterase {ECO:0000313|EMBL:KHD13755.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
hypothetical protein
L2_041_124G1_scaffold_254_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4411..6111)
DNA (1701bp) protein (567aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AJL6_CLOBU
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ENZ36553.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
pyridine nucleotide-disulfide oxidoreductase family protein
L2_041_124G1_scaffold_254_6
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6262..6582)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0AUX9_CLOBU
Rhodanese-like domain protein {ECO:0000313|EMBL:KJZ86828.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
rhodanese domain protein
L2_041_124G1_scaffold_254_7
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6911..7675)
DNA (765bp) protein (255aa)
Transcriptional regulator, DeoR family n=3 Tax=Clostridium butyricum RepID=B1QV34_CLOBU
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:EEP54714.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
transcriptional regulator of sugar metabolism
L2_041_124G1_scaffold_254_8
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7852..8661
DNA (810bp) protein (270aa)
Cof-like hydrolase n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z5J3_CLOBU
Hydrolase (HAD superfamily) in cluster with DUF1447 {ECO:0000313|EMBL:KJZ86857.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
HAD-superfamily hydrolase, subfamily IIB
L2_041_124G1_scaffold_254_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8779..10371)
DNA (1593bp) protein (531aa)
DNA topoisomerase 3 {ECO:0000256|HAMAP-Rule:MF_00953}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00953, ECO:0000256|SAAS:SAAS00046608};; DNA topoisomerase III {ECO:0000256|HAMAP-Rule:MF_00953}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
DNA topoisomerase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ASV7_CLOBU
DNA topoisomerase III
L2_041_124G1_scaffold_254_10
RIFOXYC2_FULL_Ignavibacteria_38_25_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(10812..15374)
DNA (4563bp) protein (1521aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B3CA07
Tax=RIFOXYC2_FULL_Ignavibacteria_38_25_curated
L2_041_124G1_scaffold_254_11
Wohlfahrtiimonas chitiniclastica, Wohlfahrtiimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15390..16598)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=1 Tax=Wohlfahrtiimonas chitiniclastica SH04 RepID=L8Y0B3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ELV08435.1}; TaxID=1261130 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Wohlfahrtiimonas.;" source="Wohlfahrtiimonas chitiniclastica SH04.;"
metallo-beta-lactamase family protein
L2_041_124G1_scaffold_254_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16989..17294)
DNA (306bp) protein (102aa)
Transposase n=1 Tax=Turicibacter sp. HGF1 RepID=F0HFV9_9FIRM
Transposase family protein {ECO:0000313|EMBL:AIY81334.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L2_041_124G1_scaffold_254_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17464..17685
DNA (222bp) protein (74aa)
SOS-response repressor and protease LexA n=1 Tax=Clostridium botulinum RepID=R4NQY8_CLOBO
SOS-response repressor and protease LexA {ECO:0000313|EMBL:AGL45006.1}; Uncharacterized protein {ECO:0000313|EMBL:AGL45126.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
hypothetical protein
L2_041_124G1_scaffold_254_14
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17729..19912)
DNA (2184bp) protein (728aa)
DNA topoisomerase 3 {ECO:0000256|HAMAP-Rule:MF_00953}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00953, ECO:0000256|SAAS:SAAS00046608};; DNA topoisomerase III {ECO:0000256|HAMAP-Rule:MF_00953}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
DNA topoisomerase n=2 Tax=Clostridium butyricum DKU-01 RepID=M8J9Z2_CLOBU
DNA topoisomerase III
L2_041_124G1_scaffold_254_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19949..20461)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XUN8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:AIY81276.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L2_041_124G1_scaffold_254_16
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20443..22491)
DNA (2049bp) protein (683aa)
Phage integrase family site-specific recombinase n=1 Tax=Clostridium botulinum RepID=R4NED8_CLOBO
Phage integrase family protein {ECO:0000313|EMBL:AIY81746.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
hypothetical protein
L2_041_124G1_scaffold_254_17
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22481..24886)
DNA (2406bp) protein (802aa)
DNA integration/recombination/inversion protein n=1 Tax=Clostridium botulinum RepID=R4NNG3_CLOBO
Phage integrase family protein {ECO:0000313|EMBL:AIY79686.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
DNA integration/recombination/invertion protein
L2_041_124G1_scaffold_254_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24895..26304)
DNA (1410bp) protein (470aa)
Site-specific recombinase n=1 Tax=Clostridium botulinum RepID=R4NQR9_CLOBO
Phage integrase family protein {ECO:0000313|EMBL:AIY81622.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
site-specific recombinase XerD
L2_041_124G1_scaffold_254_19
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26468..28108)
DNA (1641bp) protein (547aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9K340_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS40860.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
L2_041_124G1_scaffold_254_20
Bacillus cereus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(28263..29222)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Bacillus cereus HuA2-3 RepID=R8M2F4_BACCE
Uncharacterized protein {ECO:0000313|EMBL:EOP28204.1}; TaxID=1053202 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group.;" source="Bacillus cereus HuA2-3.;"
hypothetical protein
L2_041_124G1_scaffold_254_21
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29382..29738)
DNA (357bp) protein (119aa)
DNA topoisomerase 3 {ECO:0000256|HAMAP-Rule:MF_00953}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00953, ECO:0000256|SAAS:SAAS00046608};; DNA topoisomerase III {ECO:0000256|HAMAP-Rule:MF_00953}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
DNA topoisomerase n=2 Tax=Clostridium butyricum DKU-01 RepID=M8J9Z2_CLOBU
DNA topoisomerase III
L2_041_124G1_scaffold_254_22
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29868..31202)
DNA (1335bp) protein (445aa)
Mate efflux family protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8JKD7_CLOBU
Mate efflux family protein {ECO:0000313|EMBL:EEP52898.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
MATE efflux family protein
L2_041_124G1_scaffold_254_23
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31274..31486)
DNA (213bp) protein (71aa)
Uncharacterized protein n=4 Tax=Clostridium butyricum RepID=B1QV38_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:EEP53293.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
L2_041_124G1_scaffold_254_24
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31504..32532)
DNA (1029bp) protein (343aa)
UPI0003D5FDFE related cluster n=1 Tax=unknown RepID=UPI0003D5FDFE
Arsenical-resistance protein {ECO:0000313|EMBL:ETI87899.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
arsB; arsenical-resistance protein
L2_041_124G1_scaffold_254_25
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32605..32973)
DNA (369bp) protein (123aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=N9Z635_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ35135.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
protein tyrosine phosphatase
L2_041_124G1_scaffold_254_26
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33014..34762)
DNA (1749bp) protein (583aa)
arsA; arsenical pump-driving ATPase ArsA (EC:3.6.3.16)
Arsenite-activated ATPase ArsA n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z5K2_CLOBU
Arsenite-activated ATPase ArsA {ECO:0000313|EMBL:ENZ35136.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
L2_041_124G1_scaffold_254_27
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34819..35193)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ASW5_CLOBU
Arsenic resistance operon repressor {ECO:0000313|EMBL:KHD17230.1}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
Arsenical resistance operon trans-acting repressor ArsD
L2_041_124G1_scaffold_254_28
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35281..35598)
DNA (318bp) protein (106aa)
UPI0003D66F16 related cluster n=1 Tax=unknown RepID=UPI0003D66F16
Uncharacterized protein {ECO:0000313|EMBL:KJZ86845.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
ArsR family transcriptional regulator
L2_041_124G1_scaffold_254_29
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35837..37291
DNA (1455bp) protein (485aa)
Lysozyme {ECO:0000256|RuleBase:RU361176}; EC=3.2.1.17 {ECO:0000256|RuleBase:RU361176};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
Surface protective antigen SpaC n=2 Tax=Clostridium butyricum RepID=B1QV43_CLOBU
glycoside hydrolase family 25
L2_041_124G1_scaffold_254_30
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37443..37907
DNA (465bp) protein (155aa)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ogt; methylated-DNA--protein-cysteine methyltransferase, constitutive (EC:2.1.1.63)
Methylated-DNA--protein-cysteine methyltransferase n=2 Tax=Clostridium butyricum RepID=M8KDV1_CLOBU
Displaying items 1-30 of 34 in total

View Taxonomy