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L2_047_000G1_scaffold_295

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000G1_scaffold_295_1
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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120..458
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JGA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76079.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
Transposase and inactivated derivatives
L2_047_000G1_scaffold_295_2
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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522..1625
DNA (1104bp) protein (368aa)
transposase IS605 n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002D7CD18
Transposase, IS605 OrfB family {ECO:0000313|EMBL:EEG35215.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
transposase IS605
L2_047_000G1_scaffold_295_3
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1851..2786
DNA (936bp) protein (312aa)
CobW/P47K family protein n=2 Tax=Coprococcus RepID=C0B571_9FIRM
CobW/P47K family protein {ECO:0000313|EMBL:CDB85583.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
Putative GTPases (G3E family)
L2_047_000G1_scaffold_295_4
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2887..4425)
DNA (1539bp) protein (513aa)
Beta-lactamase n=2 Tax=Coprococcus RepID=C0B572_9FIRM
Beta-lactamase {ECO:0000313|EMBL:CDB85582.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
penicillin-binding protein
L2_047_000G1_scaffold_295_5
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4450..5448)
DNA (999bp) protein (333aa)
Renal dipeptidase family protein n=2 Tax=Coprococcus RepID=C0B573_9FIRM
Renal dipeptidase family protein {ECO:0000313|EMBL:CDB85581.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
peptidase M19 family protein
L2_047_000G1_scaffold_295_6
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5462..6055)
DNA (594bp) protein (198aa)
DNA-binding helix-turn-helix protein n=2 Tax=Coprococcus RepID=C0B574_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDB85580.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
Cupin 2 conserved barrel domain protein
L2_047_000G1_scaffold_295_7
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6092..7255)
DNA (1164bp) protein (388aa)
Aminotransferase, class I/II n=2 Tax=Coprococcus RepID=C0B575_9FIRM
Aminotransferase class I/II {ECO:0000313|EMBL:CDB85579.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
aminotransferase class I and II
L2_047_000G1_scaffold_295_8
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7279..8133)
DNA (855bp) protein (285aa)
D-stereospecific aminopeptidase n=2 Tax=Coprococcus RepID=C0B576_9FIRM
D-stereospecific aminopeptidase {ECO:0000313|EMBL:CDB85578.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
D-stereospecific aminopeptidase
L2_047_000G1_scaffold_295_9
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8355..8993
DNA (639bp) protein (213aa)
ABC transporter, substrate-binding protein, family 5 n=2 Tax=Coprococcus RepID=C0B577_9FIRM
ABC transporter substrate-binding protein family 5 {ECO:0000313|EMBL:CDB85577.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
ABC-type oligopeptide transport system, periplasmic component
L2_047_000G1_scaffold_295_10
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9189..10085
DNA (897bp) protein (299aa)
ABC transporter, substrate-binding protein, family 5 n=2 Tax=Coprococcus RepID=C0B577_9FIRM
ABC transporter substrate-binding protein family 5 {ECO:0000313|EMBL:CDB85577.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
family 5 extracellular solute-binding protein
L2_047_000G1_scaffold_295_11
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10154..11071
DNA (918bp) protein (306aa)
Oligopeptide transport system permease protein OppB n=2 Tax=Coprococcus RepID=C0B578_9FIRM
Oligopeptide transport system permease protein OppB {ECO:0000313|EMBL:CDB85576.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
ABC transporter permease
L2_047_000G1_scaffold_295_12
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11087..12424
DNA (1338bp) protein (446aa)
ABC transporter, permease protein n=2 Tax=Coprococcus RepID=C0B579_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEG91376.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
binding-protein-dependent transport system inner membrane protein
L2_047_000G1_scaffold_295_13
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12439..13470
DNA (1032bp) protein (344aa)
ABC transporter ATP-binding protein n=1 Tax=Coprococcus comes CAG:19 RepID=R6LPY2_9FIRM
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDB85574.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
oppD; oligopeptide transporter subunit ; ATP-binding component of ABC superfamily
L2_047_000G1_scaffold_295_14
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13460..14437
DNA (978bp) protein (326aa)
ABC transporter, ATP-binding protein n=2 Tax=Coprococcus RepID=C0B581_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEG91378.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
Oligopeptide transport ATP-binding protein OppF
L2_047_000G1_scaffold_295_15
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14464..15645
DNA (1182bp) protein (394aa)
Aminotransferase classes I and II n=1 Tax=Clostridium sp. CAG:58 RepID=R6S3S5_9CLOT
Aminotransferase classes I and II {ECO:0000313|EMBL:CDC49961.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
putative aminotransferase
L2_047_000G1_scaffold_295_16
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15664..16941
DNA (1278bp) protein (426aa)
UPF0597 protein BN524_00330 n=1 Tax=Coprococcus comes CAG:19 RepID=R6MI59_9FIRM
UPF0597 protein BN524_00330 {ECO:0000256|HAMAP-Rule:MF_01845}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
UPF0597 protein yhaM
L2_047_000G1_scaffold_295_17
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17106..17435
DNA (330bp) protein (110aa)
Uncharacterized protein n=2 Tax=Coprococcus RepID=C0B584_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG91381.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
hypothetical protein
L2_047_000G1_scaffold_295_18
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17733..18305
DNA (573bp) protein (191aa)
Glycerol-3-phosphate responsive antiterminator n=2 Tax=Coprococcus RepID=C0B585_9FIRM
Glycerol-3-phosphate responsive antiterminator {ECO:0000313|EMBL:CDB85570.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
Glycerol-3-phosphate responsive antiterminator (mRNA-binding)
L2_047_000G1_scaffold_295_19
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18438..19934
DNA (1497bp) protein (499aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=2 Tax=Coprococcus RepID=C0B586_9FIRM
L2_047_000G1_scaffold_295_20
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19995..20708
DNA (714bp) protein (238aa)
Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) n=2 Tax=Coprococcus RepID=R6LDL0_9FIRM
Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) {ECO:0000313|EMBL:CDB85568.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family)
L2_047_000G1_scaffold_295_21
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20854..22290
DNA (1437bp) protein (479aa)
Predicted dehydrogenase n=1 Tax=Coprococcus comes CAG:19 RepID=R6MI54_9FIRM
Predicted dehydrogenase {ECO:0000313|EMBL:CDB85567.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
Predicted dehydrogenase
L2_047_000G1_scaffold_295_22
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22308..23576
DNA (1269bp) protein (423aa)
Thioredoxin reductase (EC:1.5.3.1)
Pyridine nucleotide-disulfide oxidoreductase n=2 Tax=Coprococcus RepID=C0B590_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EEG91387.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
L2_047_000G1_scaffold_295_23
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23580..23939
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=Coprococcus RepID=C0B591_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG91388.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
Uncharacterized protein with conserved CXXC pairs
L2_047_000G1_scaffold_295_24
unknown

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23964..24116
DNA (153bp) protein (51aa)

This feature has no annotations

L2_047_000G1_scaffold_295_25
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24225..25751
DNA (1527bp) protein (509aa)
alpha-L-arabinofuranosidase (EC:3.2.1.55)
Alpha-L-arabinofuranosidase {ECO:0000313|EMBL:ADK13218.1}; EC=3.2.1.55 {ECO:0000313|EMBL:ADK13218.1};; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
Alpha-L-arabinofuranosidase n=2 Tax=Clostridium RepID=D8GKA0_CLOLD
L2_047_000G1_scaffold_295_26
Paenibacillus riograndensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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25786..27279
DNA (1494bp) protein (498aa)
ABC-type sugar transport system ATPase component n=1 Tax=Roseburia sp. CAG:45 RepID=R6P525_9FIRM
sugar ABC transporter ATP-binding protein
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:CQR54374.1}; TaxID=1073571 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus riograndensis SBR5.;"
L2_047_000G1_scaffold_295_27
GWD2_OD1_52_7, Uhrbacteria, Parcubacteria, Bacteria

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27291..28232
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Paenibacillus fonticola RepID=UPI00037FDC04
Uncharacterized protein {ECO:0000313|EMBL:KKW28301.1}; TaxID=1618989 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWD2_52_7.;"
putative membrane protein
L2_047_000G1_scaffold_295_28
GWD2_OD1_52_7, Uhrbacteria, Parcubacteria, Bacteria

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28268..29458
DNA (1191bp) protein (397aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW28302.1}; TaxID=1618989 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWD2_52_7.;"
periplasmic binding protein/LacI transcriptional regulator
L2_047_000G1_scaffold_295_29
GWD2_OD1_52_7, Uhrbacteria, Parcubacteria, Bacteria

Not on your lists

29494..30480
DNA (987bp) protein (329aa)
Branched-chain amino acid ABC transporter permease protein n=1 Tax=Roseburia sp. CAG:50 RepID=R5TFP0_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:KKW28304.1}; TaxID=1618989 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWD2_52_7.;"
hypothetical protein
L2_047_000G1_scaffold_295_30
GWD2_OD1_52_7, Uhrbacteria, Parcubacteria, Bacteria

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30597..32189
DNA (1593bp) protein (531aa)
Transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J245_9BACL
Response regulator receiver domain protein {ECO:0000313|EMBL:KKW28305.1}; TaxID=1618989 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Uhrbacteria) bacterium GW2011_GWD2_52_7.;"
response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
Displaying items 1-30 of 62 in total

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