ggKbase home page

L2_047_000G1_scaffold_334

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000G1_scaffold_334_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

349..648
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ATA8_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ35262.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
putative transcriptional regulator, ArsR family
L2_047_000G1_scaffold_334_2
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

744..1514
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ALS9_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ33704.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
short-chain dehydrogenase
L2_047_000G1_scaffold_334_3
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1773..2525
DNA (753bp) protein (251aa)
UPI0003D5D2DC related cluster n=1 Tax=unknown RepID=UPI0003D5D2DC
Iron-sulfur cluster-binding protein {ECO:0000313|EMBL:ETI90523.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
4Fe-4S ferredoxin
L2_047_000G1_scaffold_334_4
Fusobacterium varium, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(2561..2974)
DNA (414bp) protein (138aa)
Putative membrane protein n=1 Tax=Fusobacterium varium ATCC 27725 RepID=C6JL01_FUSVA
Putative membrane protein {ECO:0000313|EMBL:EES64511.1}; TaxID=469618 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium varium ATCC 27725.;"
hypothetical protein
L2_047_000G1_scaffold_334_5
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3230..3982
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TI58_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ50950.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L2_047_000G1_scaffold_334_6
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4378..4689
DNA (312bp) protein (104aa)
Thioredoxin n=2 Tax=Clostridium butyricum RepID=B1QZT5_CLOBU
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
trxA; thioredoxin TrxA
L2_047_000G1_scaffold_334_7
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5009..5872
DNA (864bp) protein (288aa)
Thioredoxin-disulfide reductase {ECO:0000313|EMBL:EHJ01587.1}; EC=1.8.1.9 {ECO:0000313|EMBL:EHJ01587.1};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
Thioredoxin-disulfide reductase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M4L2_9CLOT
thioredoxin-disulfide reductase
L2_047_000G1_scaffold_334_8
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5891..6322
DNA (432bp) protein (144aa)
Organic hydroperoxide resistance transcriptional regulator n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MN86_CLOSA
ohrR; organic hydroperoxide resistance transcriptional regulator
Organic hydroperoxide resistance transcriptional regulator {ECO:0000313|EMBL:AGX42045.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_047_000G1_scaffold_334_9
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6492..7382
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum DKU-01 RepID=M8K3N1_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ETI87462.1}; TaxID=1403941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum DORA_1.;"
hypothetical protein
L2_047_000G1_scaffold_334_10
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8318..10072)
DNA (1755bp) protein (585aa)
ade; adenine deaminase Ade (EC:3.5.4.2)
Adenine deaminase {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067}; Short=Adenase {ECO:0000256|HAMAP-Rule:MF_01518};; Short=Adenine aminase {ECO:0000256|HAMAP-Rule:MF_01518};; EC=3.5.4.2 {ECO:0000256|HAMAP-Rule:MF_01518, ECO:0000256|SAAS:SAAS00006067};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
adenine deaminase n=1 Tax=Clostridium beijerinckii RepID=UPI0002F70BEA
L2_047_000G1_scaffold_334_11
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10321..11055
DNA (735bp) protein (245aa)
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01039};; Short=dPGM {ECO:0000256|HAMAP-Rule:MF_01039};; EC=5.4.2.11 {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512};; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase n=1 Tax=Bacillus cereus AH1271 RepID=C2YRV3_BACCE
gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
L2_047_000G1_scaffold_334_12
Clostridium sp. IBUN13A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11076..11855)
DNA (780bp) protein (260aa)
Transcriptional regulator, DeoR family n=2 Tax=Clostridium butyricum RepID=M8KBW2_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ92180.1}; TaxID=1523156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN13A.;"
deoR; deoxyribose operon repressor
L2_047_000G1_scaffold_334_13
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12169..12831
DNA (663bp) protein (221aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00114};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00114, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00114}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00114}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
deoC; deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=4 Tax=Clostridium butyricum RepID=B1QZT0_CLOBU
L2_047_000G1_scaffold_334_14
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13156..14457
DNA (1302bp) protein (434aa)
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:KJZ86486.1}; EC=2.4.2.2 {ECO:0000313|EMBL:KJZ86486.1};; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
pyrimidine-nucleoside phosphorylase (EC:2.4.2.2)
Pyrimidine-nucleoside phosphorylase n=2 Tax=Clostridium butyricum RepID=M8JIE4_CLOBU
L2_047_000G1_scaffold_334_15
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14595..15134)
DNA (540bp) protein (180aa)
50S ribosomal protein L25 n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9BSF6_9CLOT
50S ribosomal protein L25 {ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|SAAS:SAAS00023360}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
50S ribosomal protein L25
L2_047_000G1_scaffold_334_16
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15790..16725
DNA (936bp) protein (312aa)
MoxR-like ATPase n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UAE9_9CLOT
MoxR-like ATPase {ECO:0000313|EMBL:EKQ55189.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
ATPase
L2_047_000G1_scaffold_334_17
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16749..17909
DNA (1161bp) protein (387aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TS93_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKQ55190.1}; Flags: Precursor;; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
hypothetical protein
L2_047_000G1_scaffold_334_18
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17912..20233
DNA (2322bp) protein (774aa)
Transglutaminase-like enzyme, putative cysteine protease n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U2N5_9CLOT
Transglutaminase-like enzyme, putative cysteine protease {ECO:0000313|EMBL:EKQ55191.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
transglutaminase domain-containing protein
L2_047_000G1_scaffold_334_19
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20492..21268
DNA (777bp) protein (259aa)
hmp; flavohemoprotein Hmp (EC:1.14.12.17)
Flavohemoprotein Hmp {ECO:0000313|EMBL:AGX44755.1}; EC=1.14.12.17 {ECO:0000313|EMBL:AGX44755.1};; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Flavohemoprotein Hmp n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MVX2_CLOSA
L2_047_000G1_scaffold_334_20
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21340..22797
DNA (1458bp) protein (486aa)
gapN; NADP-dependent glyceraldehyde-3-phosphate dehydrogenase GapN (EC:1.2.1.9)
Glyceraldehyde-3-phosphate dehydrogenase (NADP(+)) n=1 Tax=Clostridium sp. DL-VIII RepID=G7M1C4_9CLOT
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EKQ57257.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L2_047_000G1_scaffold_334_21
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23128..23676
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MRG1_CLOSA
hemerythrin HHE cation binding domain protein
Hemerythrin HHE cation binding domain protein {ECO:0000313|EMBL:CDM68905.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L2_047_000G1_scaffold_334_22
Clostridium carboxidivorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23773..24474
DNA (702bp) protein (234aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PSH4_9CLOT
Crp/Fnr family transcriptional regulator
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EET87852.1}; TaxID=536227 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium carboxidivorans P7.;"
L2_047_000G1_scaffold_334_23
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24644..24994
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JLX0_CELLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ84646.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L2_047_000G1_scaffold_334_24
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25266..25904
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:265 RepID=R6KLL8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB76073.1}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
hypothetical protein
L2_047_000G1_scaffold_334_25
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26487..27695
DNA (1209bp) protein (403aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine-tRNA ligase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HD37_9CLOT
L2_047_000G1_scaffold_334_26
unknown

Not on your lists

comp(27804..28109)
DNA (306bp) protein (102aa)

This feature has no annotations

L2_047_000G1_scaffold_334_27
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28202..29014)
DNA (813bp) protein (271aa)
Putative ABC transporter, permease protein n=2 Tax=Clostridium botulinum B RepID=B2TKS8_CLOBB
ABC transporter permease
Putative ABC transporter, permease protein {ECO:0000313|EMBL:ACD23431.1}; Putative transmembrane protein {ECO:0000313|EMBL:CDH89604.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L2_047_000G1_scaffold_334_28
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29008..29757)
DNA (750bp) protein (250aa)
ABC transporter related protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7M4J8_9CLOT
ABC transporter related protein {ECO:0000313|EMBL:EHJ01573.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
ABC-type multidrug transport system, ATPase component
L2_047_000G1_scaffold_334_29
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29760..30128)
DNA (369bp) protein (123aa)
Regulatory protein GntR, HTH n=2 Tax=Clostridium RepID=A6LRJ5_CLOB8
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:ETD70533.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
L2_047_000G1_scaffold_334_30
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30509..30886
DNA (378bp) protein (126aa)
RutC family protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1LNU2_9CLOT
RutC family protein
RutC family protein {ECO:0000313|EMBL:AGF54510.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
Displaying items 1-30 of 68 in total

View Taxonomy