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L2_047_000G1_scaffold_355

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000G1_scaffold_355_1
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..365)
DNA (363bp) protein (121aa)
Protein translocase subunit SecA n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L620_9FIRM
protein translocase subunit secA
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000G1_scaffold_355_2
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(433..1830)
DNA (1398bp) protein (466aa)
Penicillin-binding protein transpeptidase domain protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV50_9FIRM
Penicillin-binding protein transpeptidase domain protein {ECO:0000313|EMBL:CCX84110.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_047_000G1_scaffold_355_3
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1948..3645)
DNA (1698bp) protein (566aa)
FHA domain protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E5S3_9FIRM
FHA domain protein {ECO:0000313|EMBL:CCX84112.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_047_000G1_scaffold_355_4
unknown

Not on your lists

comp(4110..4277)
DNA (168bp) protein (56aa)

This feature has no annotations

L2_047_000G1_scaffold_355_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4294..4656)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84115.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_047_000G1_scaffold_355_6
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4682..5230)
DNA (549bp) protein (183aa)
Uncharacterized conserved protein n=2 Tax=Ruminococcus RepID=D4L619_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL15064.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000G1_scaffold_355_7
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5501..6367)
DNA (867bp) protein (289aa)
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DYZ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84119.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_047_000G1_scaffold_355_8
unknown

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6652..6777
DNA (126bp) protein (42aa)

This feature has no annotations

L2_047_000G1_scaffold_355_9
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6900..8639
DNA (1740bp) protein (580aa)
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV58_9FIRM
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain {ECO:0000313|EMBL:CCX84120.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L2_047_000G1_scaffold_355_10
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8805..9602)
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L617_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15062.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000G1_scaffold_355_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9746..11089)
DNA (1344bp) protein (448aa)
Uncharacterized protein conserved in bacteria n=4 Tax=root RepID=D4L616_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL15061.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000G1_scaffold_355_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11089..13992)
DNA (2904bp) protein (968aa)
Putative CoA-substrate-specific enzyme activase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVF5_9FIRM
Putative CoA-substrate-specific enzyme activase {ECO:0000313|EMBL:CCX84123.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_047_000G1_scaffold_355_13
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14278..14931)
DNA (654bp) protein (218aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L615_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15060.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000G1_scaffold_355_14
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15076..15774
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L614_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15059.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000G1_scaffold_355_15
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15947..16951)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5E7M0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15058.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000G1_scaffold_355_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16973..17665)
DNA (693bp) protein (231aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5E5T5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCX84127.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_047_000G1_scaffold_355_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17879..18073)
DNA (195bp) protein (65aa)
Predicted transcriptional regulators n=2 Tax=Ruminococcus RepID=D4L611_9FIRM
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CCX84128.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_047_000G1_scaffold_355_18
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18070..18591)
DNA (522bp) protein (174aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L610_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15055.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000G1_scaffold_355_19
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18887..19084)
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L609_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15054.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000G1_scaffold_355_20
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20000..20608
DNA (609bp) protein (203aa)
Ribosome maturation factor RimP n=2 Tax=Ruminococcus RepID=D4L606_9FIRM
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_047_000G1_scaffold_355_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20694..21854
DNA (1161bp) protein (387aa)
Transcription termination factor NusA n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E7M8_9FIRM
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
transcription termination factor NusA
L2_047_000G1_scaffold_355_22
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21879..22187
DNA (309bp) protein (103aa)
Predicted nucleic-acid-binding protein implicated in transcription termination n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L604_9FIRM
Predicted nucleic-acid-binding protein implicated in transcription termination
Predicted nucleic-acid-binding protein implicated in transcription termination {ECO:0000313|EMBL:CBL15049.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000G1_scaffold_355_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22203..22535
DNA (333bp) protein (111aa)
Ribosomal protein HS6-type (S12/L30/L7a) n=2 Tax=Ruminococcus RepID=D4L603_9FIRM
Ribosomal protein HS6-type (S12/L30/L7a)
Ribosomal protein HS6-type (S12/L30/L7a) {ECO:0000313|EMBL:CCX84138.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_047_000G1_scaffold_355_24
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22522..24885
DNA (2364bp) protein (788aa)
Translation initiation factor IF-2 n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L602_9FIRM
bacterial translation initiation factor 2 (bIF-2)
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000G1_scaffold_355_25
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25155..25532
DNA (378bp) protein (126aa)
Ribosome-binding factor A n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L601_9FIRM
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000313|EMBL:CBL15046.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000G1_scaffold_355_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25516..26457
DNA (942bp) protein (314aa)
Exopolyphosphatase-related proteins n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DV79_9FIRM
Exopolyphosphatase-related proteins {ECO:0000313|EMBL:CCX84145.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Exopolyphosphatase-related proteins
L2_047_000G1_scaffold_355_27
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26454..27368
DNA (915bp) protein (305aa)
tRNA pseudouridine 55 synthase (EC:5.4.99.12)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
tRNA pseudouridine synthase B n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Z9_9FIRM
L2_047_000G1_scaffold_355_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27835..28506
DNA (672bp) protein (224aa)
ABC-type antimicrobial peptide transport system, ATPase component (EC:3.6.3.-)
ABC-type antimicrobial peptide transport system ATPase component n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DZ21_9FIRM
ABC-type antimicrobial peptide transport system ATPase component {ECO:0000313|EMBL:CCX84149.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_047_000G1_scaffold_355_29
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28509..31154
DNA (2646bp) protein (882aa)
ABC-type transport system, involved in lipoprotein release, permease component n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L5Z7_9FIRM
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:CBL15042.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
ABC-type transport system, involved in lipoprotein release, permease component
L2_047_000G1_scaffold_355_30
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31325..31972
DNA (648bp) protein (216aa)
Two component transcriptional regulator winged helix family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DVH8_9FIRM
Two component transcriptional regulator winged helix family {ECO:0000313|EMBL:CCX84153.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
winged helix family two component transcriptional regulator
Displaying items 1-30 of 65 in total

View Taxonomy