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L2_047_000G1_scaffold_556

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000G1_scaffold_556_1
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

957..2060
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BQI5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA63249.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
methyltransferase, FkbM family
L2_047_000G1_scaffold_556_2
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2235..3155
DNA (921bp) protein (307aa)
TIGR00255 family protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BJ63_9CLOT
TIGR00255 family protein {ECO:0000313|EMBL:CDA63250.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
conserved hypothetical protein TIGR00255
L2_047_000G1_scaffold_556_3
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3171..3458
DNA (288bp) protein (96aa)
UPF0296 protein BN513_00095 n=1 Tax=Clostridium sp. CAG:169 RepID=R6BVR7_9CLOT
UPF0296 protein BN513_00095 {ECO:0000256|HAMAP-Rule:MF_01503}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
hypothetical protein
L2_047_000G1_scaffold_556_4
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3451..4059
DNA (609bp) protein (203aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Clostridium sp. CAG:169 RepID=R6CD69_9CLOT
L2_047_000G1_scaffold_556_5
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4052..4285
DNA (234bp) protein (78aa)
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
DNA-directed RNA polymerase subunit omega n=1 Tax=Clostridium sp. CAG:169 RepID=R6BG42_9CLOT
DNA-directed RNA polymerase, omega subunit
L2_047_000G1_scaffold_556_6
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4407..6830
DNA (2424bp) protein (808aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
primosomal protein N' (EC:3.6.1.-)
Primosomal protein N n=1 Tax=Clostridium sp. CAG:169 RepID=R6BQI9_9CLOT
L2_047_000G1_scaffold_556_7
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6868..7341
DNA (474bp) protein (158aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BJ67_9CLOT
L2_047_000G1_scaffold_556_8
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7363..8283
DNA (921bp) protein (307aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
fmt; Methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Clostridium sp. CAG:242 RepID=R6CW53_9CLOT
L2_047_000G1_scaffold_556_9
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8407..9102
DNA (696bp) protein (232aa)
Neutral zinc metallopeptidase family protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BJI6_9CLOT
Neutral zinc metallopeptidase family protein {ECO:0000313|EMBL:CDA60944.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
peptidase, membrane zinc metallopeptidase
L2_047_000G1_scaffold_556_10
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9180..10514
DNA (1335bp) protein (445aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
rsmB; ribosomal RNA small subunit methyltransferase B (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Clostridium sp. CAG:242 RepID=R6DGP7_9CLOT
L2_047_000G1_scaffold_556_11
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10515..11606
DNA (1092bp) protein (364aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Clostridium sp. CAG:242 RepID=R6CZL0_9CLOT
L2_047_000G1_scaffold_556_12
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11603..12337
DNA (735bp) protein (245aa)
Protein phosphatase 2C n=1 Tax=Clostridium sp. CAG:169 RepID=R6BCB8_9CLOT
Protein phosphatase 2C {ECO:0000313|EMBL:CDA61843.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
protein serine/threonine phosphatase
L2_047_000G1_scaffold_556_13
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12365..14476
DNA (2112bp) protein (704aa)
Kinase domain protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BLN1_9CLOT
Kinase domain protein {ECO:0000313|EMBL:CDA61844.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
serine/threonine protein kinase with PASTA sensor(s)
L2_047_000G1_scaffold_556_14
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14625..15527
DNA (903bp) protein (301aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
rsgA; ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Clostridium sp. CAG:169 RepID=R6BFA1_9CLOT
L2_047_000G1_scaffold_556_15
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15559..16194
DNA (636bp) protein (212aa)
Thiamine diphosphokinase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BRU9_9CLOT
Thiamine diphosphokinase {ECO:0000313|EMBL:CDA61846.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
thiamine pyrophosphokinase
L2_047_000G1_scaffold_556_16
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16429..17379
DNA (951bp) protein (317aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
prmA; Ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Clostridium sp. CAG:169 RepID=R6C906_9CLOT
L2_047_000G1_scaffold_556_17
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17392..18117
DNA (726bp) protein (242aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Clostridium sp. CAG:169 RepID=R6BCC2_9CLOT
hypothetical protein
L2_047_000G1_scaffold_556_18
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18142..18990
DNA (849bp) protein (283aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium sp. CAG:169 RepID=R6BLN6_9CLOT
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CDA61849.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
L2_047_000G1_scaffold_556_19
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19017..19676
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BFA4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61850.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
L2_047_000G1_scaffold_556_20
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19624..19821
DNA (198bp) protein (66aa)
UPF0291 protein BN513_01569 n=1 Tax=Clostridium sp. CAG:169 RepID=R6BRV4_9CLOT
UPF0291 protein BN513_01569 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
hypothetical protein
L2_047_000G1_scaffold_556_21
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19875..21548
DNA (1674bp) protein (558aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
2-isopropylmalate synthase n=1 Tax=Clostridium sp. CAG:169 RepID=R6C911_9CLOT
2-isopropylmalate synthase
L2_047_000G1_scaffold_556_22
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21594..22148)
DNA (555bp) protein (185aa)
Ribosomal subunit interface protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BCC6_9CLOT
Ribosomal subunit interface protein {ECO:0000313|EMBL:CDA61853.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
sigma 54 modulation protein/ribosomal protein S30EA
L2_047_000G1_scaffold_556_23
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22284..23405)
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BLP0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61854.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
conserved hypothetical protein
L2_047_000G1_scaffold_556_24
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23806..24852
DNA (1047bp) protein (349aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
Polyamine ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BFB0_9CLOT
spermidine/putrescine transport ATP-binding protein potA
L2_047_000G1_scaffold_556_25
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24857..25699
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BRV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61856.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
ABC-type spermidine/putrescine transport system, permease component I
L2_047_000G1_scaffold_556_26
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25696..26523
DNA (828bp) protein (276aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Clostridium sp. CAG:169 RepID=R6C915_9CLOT
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:CDA61857.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
potC; spermidine/putrescine transport transport ATP-binding protein PotC
L2_047_000G1_scaffold_556_27
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26523..27803
DNA (1281bp) protein (427aa)
ABC transporter solute-binding protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BCD0_9CLOT
ABC transporter solute-binding protein {ECO:0000313|EMBL:CDA61858.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
spermidine/putrescine transport ATP-binding protein PotD
L2_047_000G1_scaffold_556_28
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27970..28290
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BLP8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61859.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
TfoX domain family protein
L2_047_000G1_scaffold_556_29
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28311..28913
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:169 RepID=R6BFB5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA61860.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
hypothetical protein
L2_047_000G1_scaffold_556_30
Clostridium sp. CAG:169, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28989..31604)
DNA (2616bp) protein (872aa)
Putative calcium-translocating P-type ATPase PMCA-type n=1 Tax=Clostridium sp. CAG:169 RepID=R6BRW3_9CLOT
Putative calcium-translocating P-type ATPase PMCA-type {ECO:0000313|EMBL:CDA61861.1}; TaxID=1262778 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:169.;"
cation transporting ATPase-like protein
Displaying items 1-30 of 53 in total

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