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L2_047_000G1_scaffold_1473

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000G1_scaffold_1473_1
Mitsuokella multacida, Mitsuokella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(2..1246)
-----------------
DNA (1245bp)
protein (415aa)
Uncharacterized protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEX69603.1}; TaxID=500635 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Mitsuokella.;" source="Mitsuokella multacida DSM 20544.;"
hypothetical protein
L2_047_000G1_scaffold_1473_2
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1263..2429)
-----------------
DNA (1167bp)
protein (389aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FU01_CLOPA
Uncharacterized protein {ECO:0000313|EMBL:ETD67183.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
hypothetical protein
L2_047_000G1_scaffold_1473_3
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2579..3256)
-----------------
DNA (678bp)
protein (226aa)
aldolase n=1 Tax=Clostridium sp. JC122 RepID=UPI0002884CCE
L-fuculose phosphate aldolase
Aldolase {ECO:0000313|EMBL:KEH99589.1}; TaxID=1443117 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum D str. 16868.;"
L2_047_000G1_scaffold_1473_4
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3320..4678)
-----------------
DNA (1359bp)
protein (453aa)
PTS galactitol transporter subunit IIC n=1 Tax=Clostridium botulinum RepID=UPI0003089CDB
PTS galactitol transporter subunit IIC {ECO:0000313|EMBL:KEH99590.1}; TaxID=1443117 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum D str. 16868.;"
PTS system galactitol (gat) transporter subunit IIC
L2_047_000G1_scaffold_1473_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4778..5833)
-----------------
DNA (1056bp)
protein (352aa)
Methylthioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; Short=M1Pi {ECO:0000256|HAMAP-Rule:MF_01678};; Short=MTR-1-P isomerase {ECO:0000256|HAMAP-Rule:MF_01678};; EC=5.3.1.23 {ECO:0000256|HAMAP-Rule:MF_01678};; S-methyl-5-thioribose-1-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01678}; TaxID=1443117 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum D str. 16868.;"
methylthioribose-1-phosphate isomerase n=1 Tax=Clostridium sp. JC122 RepID=UPI0002888A38
S-methyl-5-thioribose-1-phosphate isomerase
L2_047_000G1_scaffold_1473_6
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5850..7058)
-----------------
DNA (1209bp)
protein (403aa)
Methylthioribose kinase {ECO:0000256|HAMAP-Rule:MF_01683}; Short=MTR kinase {ECO:0000256|HAMAP-Rule:MF_01683};; EC=2.7.1.100 {ECO:0000256|HAMAP-Rule:MF_01683};; TaxID=929506 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum BKT015925.;"
methylthioribose kinase n=1 Tax=Clostridium sp. JC122 RepID=UPI000289AF22
S-methyl-5-thioribose kinase
L2_047_000G1_scaffold_1473_7
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7340..8125)
-----------------
DNA (786bp)
protein (262aa)
decarboxylase n=1 Tax=Clostridium botulinum RepID=UPI00030B99DA
DeoR family transcriptional regulator
Transcriptional regulator, DeoR family {ECO:0000313|EMBL:AEB75538.1}; TaxID=929506 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum BKT015925.;"
L2_047_000G1_scaffold_1473_8
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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comp(8795..9724)
-----------------
DNA (930bp)
protein (310aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YNR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD30256.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
hypothetical protein
L2_047_000G1_scaffold_1473_9
Slackia heliotrinireducens, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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comp(9729..10580)
-----------------
DNA (852bp)
protein (284aa)
Sortase family protein, LPXTG-site transpeptidase n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N1Z8_SLAHD
sortase, LPXTG-site transpeptidase
Sortase family protein, LPXTG-site transpeptidase {ECO:0000313|EMBL:ACV23439.1}; TaxID=471855 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029; / RHS 1) (Peptococcus heliotrinreducens).;"
L2_047_000G1_scaffold_1473_10
Slackia heliotrinireducens, Slackia, Eggerthellales, Coriobacteriia, Actinobacteria, Bacteria

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comp(10658..12184)
-----------------
DNA (1527bp)
protein (509aa)
Putative collagen-binding protein n=1 Tax=Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029 / RHS 1) RepID=C7N1Z9_SLAHD
collagen-binding protein
Putative collagen-binding protein {ECO:0000313|EMBL:ACV23440.1}; TaxID=471855 species="Bacteria; Actinobacteria; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia.;" source="Slackia heliotrinireducens (strain ATCC 29202 / DSM 20476 / NCTC 11029; / RHS 1) (Peptococcus heliotrinreducens).;"
L2_047_000G1_scaffold_1473_11
unknown

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comp(12203..14812)
-----------------
DNA (2610bp)
protein (870aa)

This feature has no annotations

L2_047_000G1_scaffold_1473_12
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14997..16214)
-----------------
DNA (1218bp)
protein (406aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GJ01_EUBLK
Uncharacterized protein {ECO:0000313|EMBL:ADO35636.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
hypothetical protein
L2_047_000G1_scaffold_1473_13
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16590..17603)
-----------------
DNA (1014bp)
protein (338aa)
Sugar isomerase (SIS) n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LS13_CLOB8
sugar isomerase (SIS)
Sugar isomerase (SIS) {ECO:0000313|EMBL:ABR33143.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L2_047_000G1_scaffold_1473_14
Listeria ivanovii, Listeria, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(17625..18704)
-----------------
DNA (1080bp)
protein (360aa)
Putative Glucosamine--fructose-6-phosphate aminotransferase (C-terminal domain) n=1 Tax=Listeria ivanovii (strain ATCC BAA-678 / PAM 55) RepID=G2Z8R2_LISIP
sugar isomerase
Putative Glucosamine--fructose-6-phosphate aminotransferase (C-terminal domain) {ECO:0000313|EMBL:CBW84514.1}; TaxID=881621 species="Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.;" source="Listeria ivanovii (strain ATCC BAA-678 / PAM 55).;"
L2_047_000G1_scaffold_1473_15
Enterococcus dispar, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(18728..19537)
-----------------
DNA (810bp)
protein (270aa)
PTS system mannose/fructose/sorbose-specific IID component n=1 Tax=Enterococcus dispar ATCC 51266 RepID=S0K4T6_9ENTE
PTS system mannose/fructose/sorbose-specific IID component {ECO:0000313|EMBL:EOT40099.1}; TaxID=1139219 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus dispar ATCC 51266.;"
PTS system mannose-specific transporter subunitIID
L2_047_000G1_scaffold_1473_16
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19521..20276)
-----------------
DNA (756bp)
protein (252aa)
PTS system sorbose-specific iic component n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CTE4_9CLOT
PTS system sorbose-specific iic component {ECO:0000313|EMBL:EEG57660.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
PTS sugar transporter
L2_047_000G1_scaffold_1473_17
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

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comp(20277..20771)
-----------------
DNA (495bp)
protein (165aa)
Phosphotransferase system, component IIB (EC:2.7.1.69)
Uncharacterized protein n=2 Tax=Firmicutes RepID=R6ZR11_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD50953.1}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
L2_047_000G1_scaffold_1473_18
Clostridium sp. SS2/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20792..21208)
-----------------
DNA (417bp)
protein (139aa)
Phosphotransferase system, mannose/fructose-specific component IIA (EC:2.7.1.69)
Phosphotransferase system, mannose/fructose-specific component IIA n=4 Tax=Clostridiales RepID=D4MYB0_9FIRM
PTS system fructose IIA component {ECO:0000313|EMBL:EDS21186.1}; TaxID=411484 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. SS2/1.;"
L2_047_000G1_scaffold_1473_19
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21282..23003)
-----------------
DNA (1722bp)
protein (574aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI0002E94D28
sigma-54 factor interaction domain-containing protein
Sigma-54 factor, interaction domain-containing protein {ECO:0000313|EMBL:ABR33138.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
Displaying 19 items

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