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L2_047_000G1_scaffold_1643

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000G1_scaffold_1643_1
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7..468)
DNA (462bp) protein (154aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=908338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus harei ACS-146-V-Sch2b.;"
histidine kinase n=1 Tax=Peptoniphilus sp. JC140 RepID=UPI0002FCD8D6
sensory transduction histidine kinase
L2_047_000G1_scaffold_1643_2
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(580..1560)
DNA (981bp) protein (327aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=908338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus harei ACS-146-V-Sch2b.;"
histidine kinase n=1 Tax=Peptoniphilus sp. JC140 RepID=UPI0002FCD8D6
sensory transduction histidine kinase
L2_047_000G1_scaffold_1643_3
Peptoniphilus harei, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1560..2264)
DNA (705bp) protein (235aa)
PhoP family transcriptional regulator n=1 Tax=Peptoniphilus sp. JC140 RepID=UPI000303D7AB
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP {ECO:0000313|EMBL:EFR33638.1}; TaxID=908338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus harei ACS-146-V-Sch2b.;"
walR; Transcriptional regulatory protein WalR
L2_047_000G1_scaffold_1643_4
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2276..2848)
DNA (573bp) protein (191aa)
Putative Transcriptional regulator, LuxR family n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FLC5_9CLOT
transcriptional regulator, LuxR family
Putative Transcriptional regulator, LuxR family {ECO:0000313|EMBL:CDG01429.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
L2_047_000G1_scaffold_1643_5
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2884..4401
DNA (1518bp) protein (506aa)
Metallophosphoesterase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M9G0_9CLOT
Metallophosphoesterase {ECO:0000313|EMBL:EHJ02177.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
5'-nucleotidase
L2_047_000G1_scaffold_1643_6
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4576..6231)
DNA (1656bp) protein (552aa)
Sulfate transporter n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9C7I4_9CLOT
Sulfate transporter {ECO:0000313|EMBL:EOR24945.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
sulfate transporter
L2_047_000G1_scaffold_1643_7
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6436..6660)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Clostridium autoethanogenum DSM 10061 RepID=U5RR09_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGY75206.1}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoethanogenum DSM 10061.;"
L2_047_000G1_scaffold_1643_8
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6782..7192)
DNA (411bp) protein (137aa)
Putative lipoprotein n=1 Tax=Clostridium sordellii ATCC 9714 RepID=T2RGI0_CLOSO
Putative lipoprotein {ECO:0000313|EMBL:EPZ54640.1}; TaxID=1292036 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] sordellii ATCC 9714.;"
L2_047_000G1_scaffold_1643_9
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7296..8357)
DNA (1062bp) protein (354aa)
Serine/threonine-protein kinase Sps1 {ECO:0000313|EMBL:CEN82279.1}; EC=2.7.11.1 {ECO:0000313|EMBL:CEN82279.1};; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI00037F5EDB
kinase domain protein
L2_047_000G1_scaffold_1643_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8443..8871
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Clostridium bifermentans ATCC 638 RepID=T4VHP2_CLOBI
Uncharacterized protein {ECO:0000313|EMBL:KJU71235.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
hypothetical protein
L2_047_000G1_scaffold_1643_11
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8889..9191)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q2X4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY22060.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
L2_047_000G1_scaffold_1643_12
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9214..10557)
DNA (1344bp) protein (448aa)
Magnesium transporter n=1 Tax=Clostridium butyricum DKU-01 RepID=M8J4J7_CLOBU
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
mgtE; magnesium transporter
L2_047_000G1_scaffold_1643_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10954..11706)
DNA (753bp) protein (251aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
truA; tRNA pseudouridine(38-40) synthase (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0SU25_CLOPS
L2_047_000G1_scaffold_1643_14
Desulfosporosinus meridiei, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11744..12421)
DNA (678bp) protein (226aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB 13706 / S10) RepID=J7IXL0_DESMD
methylase
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:AFQ43833.1}; TaxID=768704 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus meridiei (strain ATCC BAA-275 / DSM 13257 / NCIMB; 13706 / S10).;"
L2_047_000G1_scaffold_1643_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12613..13725
DNA (1113bp) protein (371aa)
cold-shock deAd box protein a (EC:3.6.1.-)
RNA helicase n=1 Tax=Clostridium botulinum RepID=UPI000306C64C
Uncharacterized protein {ECO:0000313|EMBL:AIY82107.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
L2_047_000G1_scaffold_1643_16
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13951..15615)
DNA (1665bp) protein (555aa)
Hydroxylamine reductase {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00038686}; EC=1.7.99.1 {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00150119};; Hybrid-cluster protein {ECO:0000256|HAMAP-Rule:MF_00069}; Prismane protein {ECO:0000256|HAMAP-Rule:MF_00069}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
Hydroxylamine reductase n=2 Tax=Clostridium RepID=A6LVR1_CLOB8
hydroxylamine reductase
L2_047_000G1_scaffold_1643_17
Clostridium sporogenes, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15738..16352)
DNA (615bp) protein (205aa)
CHAP domain protein n=1 Tax=Clostridium sporogenes ATCC 15579 RepID=J7T7X3_CLOSG
CHAP domain protein {ECO:0000313|EMBL:EDU35937.1}; TaxID=471871 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sporogenes ATCC 15579.;"
trypanothione synthetase domain-containing protein
L2_047_000G1_scaffold_1643_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16421..17461)
DNA (1041bp) protein (347aa)
yrrT; putative methyltransferase YrrT (EC:2.1.1.-)
Methyltransferase domain family n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7E6_CLOBO
Methyltransferase {ECO:0000313|EMBL:KGM98894.1}; TaxID=1443128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum C/D str. DC5.;"
L2_047_000G1_scaffold_1643_19
unknown

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comp(17557..17805)
DNA (249bp) protein (83aa)

This feature has no annotations

L2_047_000G1_scaffold_1643_20
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17984..18715)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XZL3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ01349.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
ArsR family transcriptional regulator
L2_047_000G1_scaffold_1643_21
unknown

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comp(18900..19262)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Clostridium tunisiense RepID=UPI0002EB4E2E
L2_047_000G1_scaffold_1643_22
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19287..20348)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Clostridium autoethanogenum DSM 10061 RepID=U5RZC6_9CLOT
protein of unknown function DUF4179
Uncharacterized protein {ECO:0000313|EMBL:AGY77917.1}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoethanogenum DSM 10061.;"
L2_047_000G1_scaffold_1643_23
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20352..20633)
DNA (282bp) protein (94aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9STA1_CLOC7
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADL50717.1}; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
Displaying 23 items

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