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L2_047_000G1_scaffold_1750

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000G1_scaffold_1750_1
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..608
-----------------
DNA (606bp)
protein (202aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818, ECO:0000313|EMBL:AIY79034.1}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818, ECO:0000313|EMBL:AIY79034.1};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
rnz; ribonuclease Z (EC:3.1.26.11)
Ribonuclease Z n=2 Tax=Clostridium botulinum B RepID=RNZ_CLOBB
L2_047_000G1_scaffold_1750_2
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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811..1653
-----------------
DNA (843bp)
protein (281aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MN77_9FIRM
L2_047_000G1_scaffold_1750_3
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1839..3032
-----------------
DNA (1194bp)
protein (398aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
LL-diaminopimelate aminotransferase (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAG2_9CLOT
L2_047_000G1_scaffold_1750_4
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3245..3517
-----------------
DNA (273bp)
protein (91aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FAF0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG02018.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
metal-sensitive transcriptional repressor family protein
L2_047_000G1_scaffold_1750_5
unknown

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3736..4593
-----------------
DNA (858bp)
protein (286aa)

This feature has no annotations

L2_047_000G1_scaffold_1750_6
unknown

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4593..5195
-----------------
DNA (603bp)
protein (201aa)

This feature has no annotations

L2_047_000G1_scaffold_1750_7
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5239..6192
-----------------
DNA (954bp)
protein (318aa)
K+-dependent Na+/Ca+ exchanger protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UYP8_CLOBO
Sodium/calcium exchanger family protein {ECO:0000313|EMBL:AIY82034.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
K+-dependent Na+/Ca+ exchanger-like protein
L2_047_000G1_scaffold_1750_8
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6470..9334
-----------------
DNA (2865bp)
protein (955aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KMJ8_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX41443.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L2_047_000G1_scaffold_1750_9
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9493..9891)
-----------------
DNA (399bp)
protein (133aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QK18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY28303.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
L2_047_000G1_scaffold_1750_10
unknown

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9977..10378
-----------------
DNA (402bp)
protein (134aa)

This feature has no annotations

L2_047_000G1_scaffold_1750_11
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10427..10522)
-----------------
DNA (96bp)
protein (32aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3L8_9CLOT
ErfK/YbiS/YcfS/YnhG family protein
Uncharacterized protein {ECO:0000313|EMBL:EEH98627.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L2_047_000G1_scaffold_1750_12
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10821..11696)
-----------------
DNA (876bp)
protein (292aa)
Cation efflux family protein n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IGK0_CLOBU
Cation efflux family protein {ECO:0000313|EMBL:EEP54023.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
cation efflux protein
L2_047_000G1_scaffold_1750_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12125..12589)
-----------------
DNA (465bp)
protein (155aa)
Membrane spanning protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UYQ0_CLOBO
membrane spanning protein
Membrane protein {ECO:0000313|EMBL:KIL09220.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L2_047_000G1_scaffold_1750_14
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12589..13356)
-----------------
DNA (768bp)
protein (256aa)
Membrane spanning protein n=2 Tax=Clostridium botulinum B RepID=B2TN40_CLOBB
membrane spanning protein
Membrane spanning protein {ECO:0000313|EMBL:ACD23460.1}; Putative membrane protein {ECO:0000313|EMBL:CDH89993.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L2_047_000G1_scaffold_1750_15
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13486..14718
-----------------
DNA (1233bp)
protein (411aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000255|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000255|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000255|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000255|HAMAP-Rule:MF_00051};; TaxID=508767 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Alaska E43 / Type E3).;"
serine hydroxymethyltransferase n=1 Tax=Clostridium botulinum RepID=UPI00037F47A0
L2_047_000G1_scaffold_1750_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14954..15079
-----------------
DNA (126bp)
protein (42aa)
Uncharacterized protein n=6 Tax=Clostridium perfringens RepID=B1BV94_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT26785.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L2_047_000G1_scaffold_1750_17
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15110..15361
-----------------
DNA (252bp)
protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HFM7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98663.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L2_047_000G1_scaffold_1750_18
Planomicrobium sp. ES2, Planomicrobium, Bacillales, Bacilli, Firmicutes, Bacteria

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15452..15961
-----------------
DNA (510bp)
protein (170aa)
hypothetical protein n=1 Tax=Bacillus sp. 10403023 RepID=UPI000289BCCB
Uncharacterized protein {ECO:0000313|EMBL:CEG22819.1}; TaxID=1499687 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Planomicrobium.;" source="Planomicrobium sp. ES2.;"
hypothetical protein
L2_047_000G1_scaffold_1750_19
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16276..18918
-----------------
DNA (2643bp)
protein (881aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
valS; valine--tRNA ligase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Clostridium colicanis 209318 RepID=N9Y170_9CLOT
Displaying 19 items

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