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L2_047_000G1_scaffold_1839

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000G1_scaffold_1839_1
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..1965
-----------------
DNA (1965bp)
protein (655aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
UPI0003D5B34B related cluster n=1 Tax=unknown RepID=UPI0003D5B34B
sensor histidine kinase/response regulator
L2_047_000G1_scaffold_1839_2
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2056..2400)
-----------------
DNA (345bp)
protein (115aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HEL1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98071.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
macrophage migration inhibitory factor
L2_047_000G1_scaffold_1839_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2715..5417
-----------------
DNA (2703bp)
protein (901aa)
DNA mismatch repair protein MutS n=1 Tax=Clostridium chauvoei JF4335 RepID=S6ER99_9CLOT
mutS; DNA mismatch repair protein MutS
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_047_000G1_scaffold_1839_4
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5431..7284
-----------------
DNA (1854bp)
protein (618aa)
DNA mismatch repair protein MutL n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FM92_9CLOT
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
mutL; DNA mismatch repair protein
L2_047_000G1_scaffold_1839_5
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7300..8229
-----------------
DNA (930bp)
protein (310aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
tRNA dimethylallyltransferase n=1 Tax=Clostridium sp. DL-VIII RepID=G7M1D1_9CLOT
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
L2_047_000G1_scaffold_1839_6
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8273..8518
-----------------
DNA (246bp)
protein (82aa)
Protein hfq n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2T6_9CLOT
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hfq; RNA chaperone Hfq
L2_047_000G1_scaffold_1839_7
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8595..9878
-----------------
DNA (1284bp)
protein (428aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H3Q1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97890.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
aluminum resistance protein
L2_047_000G1_scaffold_1839_8
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9989..10570)
-----------------
DNA (582bp)
protein (194aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6ER93_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG01745.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
L2_047_000G1_scaffold_1839_9
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10633..11238)
-----------------
DNA (606bp)
protein (202aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
LexA repressor n=1 Tax=Clostridium intestinale URNW RepID=U2PVW8_9CLOT
LexA repressor
L2_047_000G1_scaffold_1839_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11396..11809
-----------------
DNA (414bp)
protein (138aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TIB3_CLOBB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIL07184.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L2_047_000G1_scaffold_1839_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11878..12447
-----------------
DNA (570bp)
protein (190aa)
Putative lipoprotein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UUG2_CLOBO
putative lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:AIY83626.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_047_000G1_scaffold_1839_12
unknown

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12625..12888
-----------------
DNA (264bp)
protein (88aa)

This feature has no annotations

L2_047_000G1_scaffold_1839_13
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12922..14280)
-----------------
DNA (1359bp)
protein (453aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H2T1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH97886.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
xerC; site-specific tyrosine recombinase XerC
L2_047_000G1_scaffold_1839_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15001..16206)
-----------------
DNA (1206bp)
protein (402aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U7A3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ66996.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
peptidase S8 and S53 subtilisin kexin sedolisin
L2_047_000G1_scaffold_1839_15
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16337..17956)
-----------------
DNA (1620bp)
protein (540aa)
DNA topoisomerase 3 {ECO:0000256|HAMAP-Rule:MF_00953}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00953, ECO:0000256|SAAS:SAAS00046608};; DNA topoisomerase III {ECO:0000256|HAMAP-Rule:MF_00953}; TaxID=1492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum.;"
DNA topoisomerase n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ASV7_CLOBU
DNA topoisomerase III
Displaying 15 items

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