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L2_047_000G1_scaffold_656

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000G1_scaffold_656_1
Clostridium sp. CAG:265, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..95
DNA (93bp) protein (31aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1262787 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:265.;"
asnS; asparagine--tRNA ligase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Clostridium sp. CAG:265 RepID=R6KKR0_9CLOT
L2_047_000G1_scaffold_656_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(193..726)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XL08_9CLOT
carbohydrate binding domain protein
Carbohydrate binding domain protein {ECO:0000313|EMBL:AIY83774.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_047_000G1_scaffold_656_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(761..1267)
DNA (507bp) protein (169aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein (EC:1.97.1.4)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UUQ1_CLOBO
L2_047_000G1_scaffold_656_4
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1333..2646)
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MRY9_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX43559.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L2_047_000G1_scaffold_656_5
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2738..3967)
DNA (1230bp) protein (410aa)
Oxidoreductase n=2 Tax=Clostridium butyricum RepID=B1QZT7_CLOBU
Oxidoreductase {ECO:0000313|EMBL:EEP53992.1}; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
oxidoreductase
L2_047_000G1_scaffold_656_6
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4212..6134)
DNA (1923bp) protein (641aa)
Aconitate hydratase, putative, Aquifex type n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TTW8_9CLOT
Aconitate hydratase, putative, Aquifex type {ECO:0000313|EMBL:EKQ56005.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
aconitate hydratase
L2_047_000G1_scaffold_656_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6164..7327)
DNA (1164bp) protein (388aa)
nifV; homocitrate synthase (EC:2.3.3.14)
Homocitrate synthase n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HIE0_9CLOT
Trans-homoaconitate synthase {ECO:0000313|EMBL:KJU71949.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L2_047_000G1_scaffold_656_8
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7612..9723)
DNA (2112bp) protein (704aa)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:EHI97044.1}; EC=1.17.4.2 {ECO:0000313|EMBL:EHI97044.1};; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Clostridium sp. DL-VIII RepID=G7LXG6_9CLOT
anaerobic ribonucleoside triphosphate reductase
L2_047_000G1_scaffold_656_9
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9947..10933
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FPV7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG02804.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
L2_047_000G1_scaffold_656_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11140..11985
DNA (846bp) protein (282aa)
EDD domain protein, DegV family n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QIZ0_9CLOT
EDD, DegV family domain protein
EDD, DegV family domain protein {ECO:0000313|EMBL:AIY83087.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_047_000G1_scaffold_656_11
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11990..12442
DNA (453bp) protein (151aa)
Putative Transcriptional regulator, PadR family n=1 Tax=Clostridium chauvoei JF4335 RepID=S6ENP8_9CLOT
Putative Transcriptional regulator, PadR family {ECO:0000313|EMBL:CDG02802.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
transcriptional regulator, PadR family
L2_047_000G1_scaffold_656_12
unknown

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12506..12703
DNA (198bp) protein (66aa)

This feature has no annotations

L2_047_000G1_scaffold_656_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12882..13073)
DNA (192bp) protein (64aa)
Ferredoxin n=212 Tax=Clostridium difficile RepID=T3H5X5_CLODC
hypothetical protein
Ferredoxin {ECO:0000313|EMBL:EQI00012.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L2_047_000G1_scaffold_656_14
Clostridium colicanis, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13143..13979)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XXQ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ00392.1}; TaxID=999411 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium colicanis 209318.;"
cobQ/CobB/MinD/ParA nucleotide binding domain protein
L2_047_000G1_scaffold_656_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14005..14838)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U530_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJU71941.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L2_047_000G1_scaffold_656_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14825..15595)
DNA (771bp) protein (257aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=632245 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum E4 str. BoNT E BL5262.;"
lgt2; prolipoprotein diacylglyceryl transferase 2 (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=3 Tax=Clostridium butyricum RepID=B1R1W5_CLOBU
L2_047_000G1_scaffold_656_17
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15693..16262)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Clostridium sp. DL-VIII RepID=G7LXF9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI97037.1}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
hypothetical protein
L2_047_000G1_scaffold_656_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16277..17557)
DNA (1281bp) protein (427aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2THX6_CLOBB
Uncharacterized protein {ECO:0000313|EMBL:KJU71939.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
hypothetical protein
L2_047_000G1_scaffold_656_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17678..18526)
DNA (849bp) protein (283aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKL3_CLOSA
ksgA; dimethyladenosine transferase
L2_047_000G1_scaffold_656_20
Clostridium sp. DL-VIII, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18530..19096)
DNA (567bp) protein (189aa)
Ribonuclease M5 {ECO:0000256|HAMAP-Rule:MF_01469}; EC=3.1.26.8 {ECO:0000256|HAMAP-Rule:MF_01469};; RNase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; Ribosomal RNA terminal maturase M5 {ECO:0000256|HAMAP-Rule:MF_01469}; TaxID=641107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. DL-VIII.;"
Ribonuclease M5 n=1 Tax=Clostridium sp. DL-VIII RepID=G7LXF6_9CLOT
putative primase-like protein
L2_047_000G1_scaffold_656_21
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19187..20233)
DNA (1047bp) protein (349aa)
3D/G5 domain protein n=2 Tax=Clostridium botulinum B RepID=B2THX3_CLOBB
3D domain protein {ECO:0000313|EMBL:AIY80696.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
3D/G5 domain protein
L2_047_000G1_scaffold_656_22
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20489..21274)
DNA (786bp) protein (262aa)
putative deoxyribonuclease (EC:3.1.21.-)
Hydrolase, TatD family n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6UAW5_9CLOT
Hydrolase, TatD family {ECO:0000313|EMBL:EKQ56019.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
L2_047_000G1_scaffold_656_23
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21400..21843)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q3D6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY22122.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
L2_047_000G1_scaffold_656_24
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22233..23861)
DNA (1629bp) protein (543aa)
metG2; methionine--tRNA ligase MetG (EC:6.1.1.10)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_00098, ECO:0000256|SAAS:SAAS00001323};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00098}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Methionine--tRNA ligase n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MN78_CLOSA
Methionyl-tRNA synthetase suspected. See adjacent gene [L2_047_000G1_scaffold_656_25].
L2_047_000G1_scaffold_656_25
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23984..25915)
DNA (1932bp) protein (644aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
metG; methionine--tRNA ligase (EC:6.1.1.10)
Methionine--tRNA ligase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6ENN3_9CLOT
L2_047_000G1_scaffold_656_26
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26368..26865
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XXQ8_9CLOT
fusaric acid resistance family protein
Fusaric acid resistance family protein {ECO:0000313|EMBL:AIY84683.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_047_000G1_scaffold_656_27
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26963..27418
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HID0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH99405.2}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
hypothetical protein
L2_047_000G1_scaffold_656_28
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27508..29229)
DNA (1722bp) protein (574aa)
Na+/H+ antiporter family protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QK34_9CLOT
Sodium:proton antiporter {ECO:0000313|EMBL:KJU71928.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
na+/H+ antiporter family protein
L2_047_000G1_scaffold_656_29
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29590..31212)
DNA (1623bp) protein (541aa)
ABC1 family protein kinase n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UXB7_CLOBA
ABC1 family protein kinase
Protein kinase {ECO:0000313|EMBL:KIL08423.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
L2_047_000G1_scaffold_656_30
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31280..31606)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKS9_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX41143.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Displaying items 1-30 of 44 in total

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