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L2_047_000G1_scaffold_5

Search features with annotation key words

Displaying items 1-30 of 312 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000G1_scaffold_5_1
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(315..1514)
DNA (1200bp) protein (400aa)
UPI0003D5FE65 related cluster n=1 Tax=unknown RepID=UPI0003D5FE65
Uncharacterized protein {ECO:0000313|EMBL:ETI82949.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
3'-5' exonuclease
L2_047_000G1_scaffold_5_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1511..2089)
DNA (579bp) protein (193aa)
UPI0003D64A92 related cluster n=1 Tax=unknown RepID=UPI0003D64A92
Uncharacterized protein {ECO:0000313|EMBL:ETI82950.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_000G1_scaffold_5_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2306..3649
DNA (1344bp) protein (448aa)
UPI0003D5F73F related cluster n=1 Tax=unknown RepID=UPI0003D5F73F
Uncharacterized protein {ECO:0000313|EMBL:ETI82951.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ATP-grasp superfamily protein
L2_047_000G1_scaffold_5_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3722..5521)
DNA (1800bp) protein (600aa)
Malto-oligosyltrehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Short=MTHase {ECO:0000256|PIRNR:PIRNR006337};; EC=3.2.1.141 {ECO:0000256|PIRNR:PIRNR006337};; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Maltooligosyl trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
malto-oligosyltrehalose trehalohydrolase (EC:3.2.1.141)
UPI0003D5F1CE related cluster n=1 Tax=unknown RepID=UPI0003D5F1CE
L2_047_000G1_scaffold_5_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5522..8041)
DNA (2520bp) protein (840aa)
malto-oligosyltrehalose synthase (EC:5.4.99.15)
UPI0003D66463 related cluster n=1 Tax=unknown RepID=UPI0003D66463
Uncharacterized protein {ECO:0000313|EMBL:ETI82953.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_000G1_scaffold_5_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8053..10197)
DNA (2145bp) protein (715aa)
glycogen debranching protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B70668
Uncharacterized protein {ECO:0000313|EMBL:ETI82954.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
glycogen debranching enzyme GlgX
L2_047_000G1_scaffold_5_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10645..11040
DNA (396bp) protein (132aa)
UPI0003D68FAA related cluster n=1 Tax=unknown RepID=UPI0003D68FAA
Uncharacterized protein {ECO:0000313|EMBL:ETI82956.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_000G1_scaffold_5_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11195..12349
DNA (1155bp) protein (385aa)
UPI0003D5C864 related cluster n=1 Tax=unknown RepID=UPI0003D5C864
Uncharacterized protein {ECO:0000313|EMBL:ETI82957.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
aminotransferase
L2_047_000G1_scaffold_5_9
unknown

Not on your lists

12757..12918
DNA (162bp) protein (54aa)

This feature has no annotations

L2_047_000G1_scaffold_5_10
Kocuria polaris, Kocuria, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13023..13610
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Micrococcus luteus RepID=UPI00030AEFF7
Uncharacterized protein {ECO:0000313|EMBL:KHD96561.1}; TaxID=136273 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Kocuria.;" source="Kocuria polaris.;"
hypothetical protein
L2_047_000G1_scaffold_5_11
Trueperella pyogenes, Trueperella, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13869..15173
DNA (1305bp) protein (435aa)
ATP-binding protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B7B17C
ATPase AAA
ATPase AAA {ECO:0000313|EMBL:AJC70097.1}; TaxID=1435056 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Trueperella.;" source="Trueperella pyogenes TP8.;"
L2_047_000G1_scaffold_5_12
unknown

Not on your lists

comp(15236..15391)
DNA (156bp) protein (52aa)

This feature has no annotations

L2_047_000G1_scaffold_5_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15861..16706)
DNA (846bp) protein (282aa)
UPI0003D5FF95 related cluster n=1 Tax=unknown RepID=UPI0003D5FF95
Uncharacterized protein {ECO:0000313|EMBL:ETI82967.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
Hypothetical membrane spanning protein with DUF81 domain
L2_047_000G1_scaffold_5_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16719..18068)
DNA (1350bp) protein (450aa)
UPI0003D5B747 related cluster n=1 Tax=unknown RepID=UPI0003D5B747
Uncharacterized protein {ECO:0000313|EMBL:ETI82968.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
Arylsulfatase regulator (Fe-S oxidoreductase)
L2_047_000G1_scaffold_5_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18061..19191)
DNA (1131bp) protein (377aa)
UPI0003D67807 related cluster n=1 Tax=unknown RepID=UPI0003D67807
ROK family transcriptional regulator {ECO:0000313|EMBL:ETI82969.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ROK family transcriptional regulator
L2_047_000G1_scaffold_5_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19223..20761)
DNA (1539bp) protein (513aa)
UPI0003D61417 related cluster n=1 Tax=unknown RepID=UPI0003D61417
Uncharacterized protein {ECO:0000313|EMBL:ETI82970.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
Sulfatase family protein
L2_047_000G1_scaffold_5_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20763..22220)
DNA (1458bp) protein (486aa)
UPI0003D5A7E7 related cluster n=1 Tax=unknown RepID=UPI0003D5A7E7
Uncharacterized protein {ECO:0000313|EMBL:ETI82971.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
Glucose/fructose transport protein
L2_047_000G1_scaffold_5_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22852..23157
DNA (306bp) protein (102aa)
UPI0003D64AA2 related cluster n=1 Tax=unknown RepID=UPI0003D64AA2
Uncharacterized protein {ECO:0000313|EMBL:ETI82973.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_000G1_scaffold_5_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23154..24659)
DNA (1506bp) protein (502aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
pncB; nicotinate phosphoribosyltransferase (EC:2.4.2.11)
UPI0003D597AE related cluster n=1 Tax=unknown RepID=UPI0003D597AE
L2_047_000G1_scaffold_5_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24689..24985
DNA (297bp) protein (99aa)
UPI0003D5A533 related cluster n=1 Tax=unknown RepID=UPI0003D5A533
ATP-dependent Clp protease adaptor protein ClpS {ECO:0000313|EMBL:ETI82975.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
clpS; ATP-dependent Clp protease adaptor protein ClpS
L2_047_000G1_scaffold_5_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24982..25575
DNA (594bp) protein (198aa)
UPI0003D5CE29 related cluster n=1 Tax=unknown RepID=UPI0003D5CE29
Uncharacterized protein {ECO:0000313|EMBL:ETI82976.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_000G1_scaffold_5_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25586..26401
DNA (816bp) protein (272aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D66178 related cluster n=1 Tax=unknown RepID=UPI0003D66178
glutamate racemase
L2_047_000G1_scaffold_5_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26398..27186
DNA (789bp) protein (263aa)
UPI0003D5F4C1 related cluster n=1 Tax=unknown RepID=UPI0003D5F4C1
Beta-lactamase superfamily hydrolase {ECO:0000313|EMBL:ETI82978.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
beta-lactamase
L2_047_000G1_scaffold_5_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(27210..27869)
DNA (660bp) protein (220aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D69B81 related cluster n=1 Tax=unknown RepID=UPI0003D69B81
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
L2_047_000G1_scaffold_5_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27866..28750)
DNA (885bp) protein (295aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
rph; tRNA nucleotidyltransferase (EC:2.7.7.56)
UPI0003D66F59 related cluster n=1 Tax=unknown RepID=UPI0003D66F59
L2_047_000G1_scaffold_5_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28782..29891
DNA (1110bp) protein (370aa)
NAD(+) diphosphatase (EC:3.6.1.22)
UPI0003D68CEC related cluster n=1 Tax=unknown RepID=UPI0003D68CEC
Uncharacterized protein {ECO:0000313|EMBL:ETI82981.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_000G1_scaffold_5_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29839..31947
DNA (2109bp) protein (703aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D67DAF related cluster n=1 Tax=unknown RepID=UPI0003D67DAF
UvrD/REP helicase
L2_047_000G1_scaffold_5_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31944..32885)
DNA (942bp) protein (314aa)
UPI0003D5B931 related cluster n=1 Tax=unknown RepID=UPI0003D5B931
UBA/ThiF-type NAD/FAD binding protein {ECO:0000313|EMBL:ETI82983.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UBA/ThiF-type NAD/FAD binding protein
L2_047_000G1_scaffold_5_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32960..34585)
DNA (1626bp) protein (542aa)
UPI0003D59E90 related cluster n=1 Tax=unknown RepID=UPI0003D59E90
Uncharacterized protein {ECO:0000313|EMBL:ETI82984.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_000G1_scaffold_5_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34711..35802
DNA (1092bp) protein (364aa)
UPI0003D62B11 related cluster n=1 Tax=unknown RepID=UPI0003D62B11
PDZ protein {ECO:0000313|EMBL:ETI82985.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
PDZ/DHR/GLGF domain-containing protein
Displaying items 1-30 of 312 in total

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