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L2_047_000G1_scaffold_174

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000G1_scaffold_174_1
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

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331..597
-----------------
DNA (267bp)
protein (89aa)
UPI0003D5F67E related cluster n=1 Tax=unknown RepID=UPI0003D5F67E
Uncharacterized protein {ECO:0000313|EMBL:ETI81819.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
DNA damage-inducible protein
L2_047_000G1_scaffold_174_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(659..1588)
-----------------
DNA (930bp)
protein (310aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D65B28 related cluster n=1 Tax=unknown RepID=UPI0003D65B28
signal peptidase I
L2_047_000G1_scaffold_174_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1937..3607
-----------------
DNA (1671bp)
protein (557aa)
UPI0003D5A6C3 related cluster n=1 Tax=unknown RepID=UPI0003D5A6C3
Uncharacterized protein {ECO:0000313|EMBL:ETI81813.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_000G1_scaffold_174_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3751..4764
-----------------
DNA (1014bp)
protein (338aa)
UPI0003D5C767 related cluster n=1 Tax=unknown RepID=UPI0003D5C767
Uncharacterized protein {ECO:0000313|EMBL:ETI81812.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_000G1_scaffold_174_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4761..5900
-----------------
DNA (1140bp)
protein (380aa)
UPI0003D5BA5C related cluster n=1 Tax=unknown RepID=UPI0003D5BA5C
Uncharacterized protein {ECO:0000313|EMBL:ETI81811.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
LPxTG motif-containing cell surface protein
L2_047_000G1_scaffold_174_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5900..12556
-----------------
DNA (6657bp)
protein (2219aa)
UPI0003D5E15C related cluster n=1 Tax=unknown RepID=UPI0003D5E15C
Uncharacterized protein {ECO:0000313|EMBL:ETI81810.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_000G1_scaffold_174_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12525..13277
-----------------
DNA (753bp)
protein (251aa)
UPI0003D651FF related cluster n=1 Tax=unknown RepID=UPI0003D651FF
LPXTG-site transpeptidase (Sortase) family protein {ECO:0000313|EMBL:ETI81809.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
LPXTG-site transpeptidase (sortase) family protein
L2_047_000G1_scaffold_174_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13403..13633
-----------------
DNA (231bp)
protein (77aa)
UPI0003D6902B related cluster n=1 Tax=unknown RepID=UPI0003D6902B
DNA-binding protein with an HTH protein {ECO:0000313|EMBL:ETI81808.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
DNA-binding protein with an HTH domain
L2_047_000G1_scaffold_174_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


13883..14251
-----------------
DNA (369bp)
protein (123aa)
50S ribosomal protein L14 n=1 Tax=Varibaculum cambriense RepID=UPI0003B66F12
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
50S ribosomal protein L14
L2_047_000G1_scaffold_174_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


14252..14671
-----------------
DNA (420bp)
protein (140aa)
ribosomal protein L24 n=1 Tax=Varibaculum cambriense RepID=UPI0003B6D680
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
50S ribosomal protein L24P
L2_047_000G1_scaffold_174_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


14671..15237
-----------------
DNA (567bp)
protein (189aa)
UPI0003D5ACF6 related cluster n=1 Tax=unknown RepID=UPI0003D5ACF6
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
50S ribosomal protein L5
L2_047_000G1_scaffold_174_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


15237..15422
-----------------
DNA (186bp)
protein (62aa)
30S ribosomal protein S14 n=1 Tax=Varibaculum cambriense RepID=UPI0003B70ECD
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364, ECO:0000256|SAAS:SAAS00014984}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
30S ribosomal protein S14
L2_047_000G1_scaffold_174_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


15482..15880
-----------------
DNA (399bp)
protein (133aa)
UPI0003D5BD51 related cluster n=1 Tax=unknown RepID=UPI0003D5BD51
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
30S ribosomal protein S8
L2_047_000G1_scaffold_174_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


15893..16429
-----------------
DNA (537bp)
protein (179aa)
UPI0003D5E151 related cluster n=1 Tax=unknown RepID=UPI0003D5E151
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
50S ribosomal protein L6
L2_047_000G1_scaffold_174_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


16430..16801
-----------------
DNA (372bp)
protein (124aa)
UPI0003D5CE02 related cluster n=1 Tax=unknown RepID=UPI0003D5CE02
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
50S ribosomal protein L18
L2_047_000G1_scaffold_174_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


16817..17506
-----------------
DNA (690bp)
protein (230aa)
30S ribosomal protein S5 n=1 Tax=Varibaculum cambriense RepID=UPI0003B60BFD
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
30S ribosomal protein S5
L2_047_000G1_scaffold_174_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


17506..17688
-----------------
DNA (183bp)
protein (61aa)
50S ribosomal protein L30 n=1 Tax=Varibaculum cambriense RepID=UPI0003B77745
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
50S ribosomal protein L30
L2_047_000G1_scaffold_174_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


17688..18185
-----------------
DNA (498bp)
protein (166aa)
50S ribosomal protein L15 n=1 Tax=Varibaculum cambriense RepID=UPI0003B5F3B1
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
50S ribosomal protein L15
L2_047_000G1_scaffold_174_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18443..19087
-----------------
DNA (645bp)
protein (215aa)
UPI0003D691AF related cluster n=1 Tax=unknown RepID=UPI0003D691AF
LysM protein {ECO:0000313|EMBL:ETI81797.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
LysM domain-containing protein
L2_047_000G1_scaffold_174_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


19364..20656
-----------------
DNA (1293bp)
protein (431aa)
UPI0003D5EBA3 related cluster n=1 Tax=unknown RepID=UPI0003D5EBA3
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
secY; preprotein translocase subunit SecY
L2_047_000G1_scaffold_174_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20653..21219
-----------------
DNA (567bp)
protein (189aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D61074 related cluster n=1 Tax=unknown RepID=UPI0003D61074
adenylate kinase
L2_047_000G1_scaffold_174_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21254..22147
-----------------
DNA (894bp)
protein (298aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
map2; methionyl aminopeptidase (EC:3.4.11.18)
UPI0003D5E233 related cluster n=1 Tax=unknown RepID=UPI0003D5E233
L2_047_000G1_scaffold_174_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22276..22818
-----------------
DNA (543bp)
protein (181aa)
UPI0003D59D3E related cluster n=1 Tax=unknown RepID=UPI0003D59D3E
Uncharacterized protein {ECO:0000313|EMBL:ETI81793.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_000G1_scaffold_174_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23053..23274
-----------------
DNA (222bp)
protein (74aa)
translation initiation factor IF-1 n=1 Tax=Varibaculum cambriense RepID=UPI0003B53AE2
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
infA; translation initiation factor IF-1
L2_047_000G1_scaffold_174_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23318..23431
-----------------
DNA (114bp)
protein (38aa)
50S ribosomal protein L36 n=1 Tax=Actinomyces neuii BVS029A5 RepID=K0YUN0_9ACTO
50S ribosomal protein L36 {ECO:0000256|HAMAP-Rule:MF_00251, ECO:0000256|RuleBase:RU000571}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
rpmJ; 50S ribosomal protein L36
L2_047_000G1_scaffold_174_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


23560..23937
-----------------
DNA (378bp)
protein (126aa)
UPI0003D60837 related cluster n=1 Tax=unknown RepID=UPI0003D60837
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
30S ribosomal protein S13
L2_047_000G1_scaffold_174_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


23983..24381
-----------------
DNA (399bp)
protein (133aa)
UPI0003D5C5FA related cluster n=1 Tax=unknown RepID=UPI0003D5C5FA
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
30S ribosomal protein S11
L2_047_000G1_scaffold_174_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24544..25545
-----------------
DNA (1002bp)
protein (334aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D65758 related cluster n=1 Tax=unknown RepID=UPI0003D65758
DNA-directed RNA polymerase subunit alpha
L2_047_000G1_scaffold_174_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


25603..26181
-----------------
DNA (579bp)
protein (193aa)
UPI0003D64ADD related cluster n=1 Tax=unknown RepID=UPI0003D64ADD
50S ribosomal protein L17 {ECO:0000256|RuleBase:RU000661}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
50S ribosomal protein L17
L2_047_000G1_scaffold_174_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26372..27130
-----------------
DNA (759bp)
protein (253aa)
UPI0003D68DD7 related cluster n=1 Tax=unknown RepID=UPI0003D68DD7
Uncharacterized protein {ECO:0000313|EMBL:ETI81786.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ROK family protein
Displaying items 1-30 of 97 in total

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