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L2_047_000M1_scaffold_20

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Displaying items 1-30 of 536 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_20_1
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..234
DNA (234bp) protein (78aa)
Membrane protein implicated in regulation of membrane protease activity n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQQ2_9FIRM
Membrane protein implicated in regulation of membrane protease activity {ECO:0000313|EMBL:CCX82590.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Membrane protein implicated in regulation of membrane protease activity
L2_047_000M1_scaffold_20_2
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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245..1150
DNA (906bp) protein (302aa)
Membrane protease subunits, stomatin/prohibitin homologs n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8C9_9FIRM
Membrane protease subunits, stomatin/prohibitin homologs
Membrane protease subunits, stomatin/prohibitin homologs {ECO:0000313|EMBL:CBL15874.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000M1_scaffold_20_3
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1230..2741
DNA (1512bp) protein (504aa)
Predicted membrane protein n=2 Tax=root RepID=R5DTZ3_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CCX82359.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted membrane protein
L2_047_000M1_scaffold_20_4
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2971..3468
DNA (498bp) protein (166aa)
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
N5-carboxyaminoimidazole ribonucleotide mutase n=2 Tax=Ruminococcus RepID=D4L8C7_9FIRM
L2_047_000M1_scaffold_20_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3465..4919
DNA (1455bp) protein (485aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
purF; Amidophosphoribosyltransferase (EC:2.4.2.14)
Amidophosphoribosyltransferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQ92_9FIRM
L2_047_000M1_scaffold_20_6
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4933..5970
DNA (1038bp) protein (346aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8C6_9FIRM
L2_047_000M1_scaffold_20_7
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5970..6596
DNA (627bp) protein (209aa)
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930, ECO:0000313|EMBL:CBL15870.1};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8C5_9FIRM
L2_047_000M1_scaffold_20_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6609..7325
DNA (717bp) protein (239aa)
IMP cyclohydrolase-like protein n=2 Tax=Ruminococcus RepID=D4L8C4_9FIRM
IMP cyclohydrolase-like protein.
IMP cyclohydrolase-like protein {ECO:0000313|EMBL:CCX82368.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_047_000M1_scaffold_20_9
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7352..8530
DNA (1179bp) protein (393aa)
AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) (EC:2.1.2.3)
AICAR transformylase/IMP cyclohydrolase PurH (Only IMP cyclohydrolase domain in Aful) n=2 Tax=Ruminococcus RepID=D4L8C3_9FIRM
AICAR transformylase/IMP cyclohydrolase PurH (Only IMP cyclohydrolase domain in Aful) {ECO:0000313|EMBL:CCX82369.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_047_000M1_scaffold_20_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8544..9809
DNA (1266bp) protein (422aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQ15_9FIRM
L2_047_000M1_scaffold_20_11
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9846..10616)
DNA (771bp) protein (257aa)
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=3 Tax=root RepID=D4L8C1_9FIRM
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000M1_scaffold_20_12
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10765..11787)
DNA (1023bp) protein (341aa)
SpoIVB peptidase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0M5_9FIRM
SpoIVB peptidase {ECO:0000313|EMBL:CCX82372.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
stage IV sporulation protein B
L2_047_000M1_scaffold_20_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11963..14350
DNA (2388bp) protein (796aa)
ATPase P-type (Transporting) HAD superfamily subfamily IC n=2 Tax=root RepID=R5DQA3_9FIRM
ATPase P-type (Transporting) HAD superfamily subfamily IC {ECO:0000313|EMBL:CCX82373.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ATPase, P-type (transporting), HAD superfamily, subfamily IC
L2_047_000M1_scaffold_20_14
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14328..15662
DNA (1335bp) protein (445aa)
tRNA nucleotidyltransferase/poly(A) polymerase (EC:2.7.7.72 3.1.4.- 3.1.3.-)
tRNA nucleotidyltransferase/poly(A) polymerase {ECO:0000313|EMBL:CBL15864.1}; EC=2.7.7.21 {ECO:0000313|EMBL:CBL15864.1};; EC=2.7.7.25 {ECO:0000313|EMBL:CBL15864.1};; EC=3.1.3.- {ECO:0000313|EMBL:CBL15864.1};; EC=3.1.4.- {ECO:0000313|EMBL:CBL15864.1};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
tRNA nucleotidyltransferase/poly(A) polymerase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8B9_9FIRM
L2_047_000M1_scaffold_20_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15727..16467)
DNA (741bp) protein (247aa)
Glutamine ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQ20_9FIRM
Glutamine ABC transporter ATP-binding protein {ECO:0000313|EMBL:CCX82375.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ABC transporter
L2_047_000M1_scaffold_20_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16457..17983)
DNA (1527bp) protein (509aa)
Amine acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E2F3_9FIRM
Amine acid ABC transporter permease protein 3-TM region His/Glu/Gln/Arg/opine family {ECO:0000313|EMBL:CCX82376.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
L2_047_000M1_scaffold_20_17
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18032..19204)
DNA (1173bp) protein (391aa)
Malic enzyme NAD binding domain protein n=1 Tax=Eubacterium sp. CAG:202 RepID=R6MR15_9FIRM
Malic enzyme NAD binding domain protein {ECO:0000313|EMBL:CCX82377.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
malic protein NAD-binding protein
L2_047_000M1_scaffold_20_18
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19896..22496
DNA (2601bp) protein (867aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
Alpha amylase catalytic domain protein n=1 Tax=Eubacterium sp. CAG:202 RepID=R6MVP3_9FIRM
Glycosidases
L2_047_000M1_scaffold_20_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22697..24289)
DNA (1593bp) protein (531aa)
Uncharacterized FAD-dependent dehydrogenases n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQC7_9FIRM
Uncharacterized FAD-dependent dehydrogenases {ECO:0000313|EMBL:CCX82398.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Uncharacterized FAD-dependent dehydrogenases
L2_047_000M1_scaffold_20_20
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24286..25518)
DNA (1233bp) protein (411aa)
Predicted flavoproteins n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQ50_9FIRM
Predicted flavoproteins {ECO:0000313|EMBL:CCX82400.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted flavoproteins
L2_047_000M1_scaffold_20_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25569..26045)
DNA (477bp) protein (159aa)
Predicted membrane protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0Q9_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CCX82402.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted membrane protein
L2_047_000M1_scaffold_20_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26242..26712
DNA (471bp) protein (157aa)
Predicted integral membrane protein n=2 Tax=root RepID=R5DQD1_9FIRM
Predicted integral membrane protein {ECO:0000313|EMBL:CCX82403.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Predicted integral membrane protein
L2_047_000M1_scaffold_20_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26744..28126
DNA (1383bp) protein (461aa)
Putative efflux protein MATE family n=2 Tax=root RepID=R5DU43_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CCX82404.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
putative efflux protein, MATE family
L2_047_000M1_scaffold_20_24
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28178..28558
DNA (381bp) protein (127aa)
Peptidase M23 family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQ55_9FIRM
Peptidase M23 family {ECO:0000313|EMBL:CCX82405.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_047_000M1_scaffold_20_25
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28641..29141
DNA (501bp) protein (167aa)
Peptidase family M50 n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L8A8_9FIRM
Peptidase family M50.
Peptidase family M50 {ECO:0000313|EMBL:CBL15853.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000M1_scaffold_20_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29154..31010
DNA (1857bp) protein (619aa)
Fe-S oxidoreductase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E0R4_9FIRM
Fe-S oxidoreductase {ECO:0000313|EMBL:CCX82407.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Fe-S oxidoreductase
L2_047_000M1_scaffold_20_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30985..31644
DNA (660bp) protein (220aa)
Radical SAM-linked protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQD6_9FIRM
Radical SAM-linked protein {ECO:0000313|EMBL:CCX82408.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_047_000M1_scaffold_20_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31653..32336
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DU49_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCX82409.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_047_000M1_scaffold_20_29
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32552..33454
DNA (903bp) protein (301aa)
Radical SAM protein TIGR01212 family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DQ60_9FIRM
Radical SAM protein TIGR01212 family {ECO:0000313|EMBL:CCX82410.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
radical SAM protein, TIGR01212 family
L2_047_000M1_scaffold_20_30
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33467..34246)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E2J5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82411.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Displaying items 1-30 of 536 in total

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