ggKbase home page

L2_047_000M1_scaffold_352

Search features with annotation key words

Displaying items 1-30 of 126 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_352_1
unknown

Not on your lists

comp(2..88)
DNA (87bp) protein (29aa)

This feature has no annotations

L2_047_000M1_scaffold_352_2
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

947..1504
DNA (558bp) protein (186aa)
Integrase family protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QT66_9CLOT
Integrase family protein {ECO:0000313|EMBL:CDC39828.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
DNA integration/recombination/inversion protein
L2_047_000M1_scaffold_352_3
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1535..1873)
DNA (339bp) protein (113aa)
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase n=1 Tax=Eubacterium sp. CAG:202 RepID=R6N8U5_9FIRM
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase {ECO:0000313|EMBL:CDC02741.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
aminotransferase class-III
L2_047_000M1_scaffold_352_4
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2268..3200)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E5W1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX83496.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_047_000M1_scaffold_352_5
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3388..4041
DNA (654bp) protein (218aa)
Two-component system transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTN3_9FIRM
Two-component system transcriptional regulator {ECO:0000313|EMBL:CCX83498.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_047_000M1_scaffold_352_6
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4059..5498
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Signal transduction histidine kinase n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6U5_9FIRM
Signal transduction histidine kinase
L2_047_000M1_scaffold_352_7

Not on your lists

5485..6276
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1RCH8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC43418.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L2_047_000M1_scaffold_352_8
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6362..7366
DNA (1005bp) protein (335aa)
Uncharacterized protein involved in methicillin resistance n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTP7_9FIRM
Uncharacterized protein involved in methicillin resistance {ECO:0000313|EMBL:CCX83503.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Uncharacterized protein involved in methicillin resistance
L2_047_000M1_scaffold_352_9
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7456..8307
DNA (852bp) protein (284aa)
Predicted metal-dependent phosphoesterases (PHP family) n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6U2_9FIRM
Predicted metal-dependent phosphoesterases (PHP family)
Predicted metal-dependent phosphoesterases (PHP family) {ECO:0000313|EMBL:CBL15337.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000M1_scaffold_352_10
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8446..9285)
DNA (840bp) protein (280aa)
nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase [carboxylating] n=3 Tax=root RepID=D4L6U0_9FIRM
Nicotinate-nucleotide pyrophosphorylase [carboxylating] {ECO:0000313|EMBL:CCX83507.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_047_000M1_scaffold_352_11
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9285..10751)
DNA (1467bp) protein (489aa)
L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase n=2 Tax=root RepID=R5DXC0_9FIRM
L-aspartate oxidase {ECO:0000313|EMBL:CCX83509.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_047_000M1_scaffold_352_12
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10890..11075
DNA (186bp) protein (62aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6T8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15333.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000M1_scaffold_352_13
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11160..11342
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DPV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82213.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_047_000M1_scaffold_352_14
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11446..11844)
DNA (399bp) protein (133aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus bromii L2-63 RepID=D4L6T6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15331.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000M1_scaffold_352_15
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11954..13168)
DNA (1215bp) protein (405aa)
Chloride channel protein EriC n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E1X3_9FIRM
Chloride channel protein EriC {ECO:0000313|EMBL:CCX82211.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Chloride channel protein EriC
L2_047_000M1_scaffold_352_16
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13461..14435
DNA (975bp) protein (325aa)
Penicillin V acylase and related amidases (EC:3.5.1.24)
Penicillin V acylase and related amidases n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTJ4_9FIRM
Penicillin V acylase and related amidases {ECO:0000313|EMBL:CCX82209.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_047_000M1_scaffold_352_17
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14482..14670)
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DPU8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15327.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000M1_scaffold_352_18
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14688..15857)
DNA (1170bp) protein (390aa)
Sodium/glutamate symporter n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E1W9_9FIRM
Sodium/glutamate symporter {ECO:0000313|EMBL:CCX82206.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
sodium--glutamate symport carrier (gltS)
L2_047_000M1_scaffold_352_19
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15897..16853)
DNA (957bp) protein (319aa)
TRAP transporter solute receptor TAXI family n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTJ1_9FIRM
TRAP transporter solute receptor TAXI family {ECO:0000313|EMBL:CCX82204.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
TRAP transporter solute receptor, TAXI family
L2_047_000M1_scaffold_352_20
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17020..18126)
DNA (1107bp) protein (369aa)
Cell division protein FtsZ n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DPU6_9FIRM
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
cell division protein FtsZ
L2_047_000M1_scaffold_352_21
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18284..19675)
DNA (1392bp) protein (464aa)
POTRA domain protein FtsQ-type n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E039_9FIRM
POTRA domain protein FtsQ-type {ECO:0000313|EMBL:CCX82202.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
ftsQ; Cell division protein ftsQ homolog
L2_047_000M1_scaffold_352_22
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19751..21004)
DNA (1254bp) protein (418aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=2 Tax=root RepID=R5E1W4_9FIRM
L2_047_000M1_scaffold_352_23
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21067..22221)
DNA (1155bp) protein (385aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DPJ7_9FIRM
L2_047_000M1_scaffold_352_24
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22251..23507)
DNA (1257bp) protein (419aa)
Putative cell division protein FtsW n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DTI7_9FIRM
Putative cell division protein FtsW {ECO:0000313|EMBL:CCX82199.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
cell cycle protein
L2_047_000M1_scaffold_352_25
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23558..24583)
DNA (1026bp) protein (342aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5DPU1_9FIRM
L2_047_000M1_scaffold_352_26
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24619..26889)
DNA (2271bp) protein (757aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Putative stage V sporulation protein D n=1 Tax=Ruminococcus sp. CAG:108 RepID=R5E034_9FIRM
Putative stage V sporulation protein D {ECO:0000313|EMBL:CCX82197.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
L2_047_000M1_scaffold_352_27
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27023..27571)
DNA (549bp) protein (183aa)
Uncharacterized protein n=2 Tax=root RepID=R5DPJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX82195.1}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
hypothetical protein
L2_047_000M1_scaffold_352_28
Ruminococcus sp. CAG:108, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27845..28768)
DNA (924bp) protein (308aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1262950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:108.;"
S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=2 Tax=root RepID=R5DPT7_9FIRM
L2_047_000M1_scaffold_352_29
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28779..29198)
DNA (420bp) protein (140aa)
Protein MraZ n=2 Tax=Ruminococcus RepID=D4L6S4_9FIRM
mraZ protein
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L2_047_000M1_scaffold_352_30
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29644..30105)
DNA (462bp) protein (154aa)
Uncharacterized protein n=2 Tax=Ruminococcus RepID=R5DTH8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL15317.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
Displaying items 1-30 of 126 in total

View Taxonomy