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L2_047_000M1_scaffold_415

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_415_1
Collinsella sp. CAG:289, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

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comp(448..1632)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:289 RepID=R7D4D9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDD85106.1}; TaxID=1262851 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:289.;"
hypothetical protein
L2_047_000M1_scaffold_415_2
unknown

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1669..1887
DNA (219bp) protein (73aa)

This feature has no annotations

L2_047_000M1_scaffold_415_3
Clostridium sp. CAG:921, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1887..2105
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:921 RepID=R5L2Y7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY71759.1}; TaxID=1262847 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:921.;"
hypothetical protein
L2_047_000M1_scaffold_415_4
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2360..3739)
DNA (1380bp) protein (460aa)
MATE efflux family protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6AL77_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:CDA51750.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
norM; Na+-driven multidrug efflux pump
L2_047_000M1_scaffold_415_5
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3736..4314)
DNA (579bp) protein (193aa)
Transcriptional regulator, TetR family n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EJ17_9CLOT
transcriptional regulator TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEG28482.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
L2_047_000M1_scaffold_415_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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4624..4866
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5S0D3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQN61064.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_047_000M1_scaffold_415_7
unknown

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4900..5478
DNA (579bp) protein (193aa)

This feature has no annotations

L2_047_000M1_scaffold_415_8
unknown

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comp(5533..6519)
DNA (987bp) protein (329aa)

This feature has no annotations

L2_047_000M1_scaffold_415_9
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6512..7078)
DNA (567bp) protein (189aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0SXV7_SYNGF
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADY57018.1}; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
L2_047_000M1_scaffold_415_10
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7265..8545)
DNA (1281bp) protein (427aa)
Alpha amylase catalytic region n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GT95_9FIRM
Alpha amylase catalytic region {ECO:0000313|EMBL:CDB27625.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
alpha amylase
L2_047_000M1_scaffold_415_11
unknown

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8827..8979
DNA (153bp) protein (51aa)

This feature has no annotations

L2_047_000M1_scaffold_415_12
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9495..10778
DNA (1284bp) protein (428aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
murA3; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3 (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P7G8_9FIRM
L2_047_000M1_scaffold_415_13
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10962..11747
DNA (786bp) protein (262aa)
Metallo-beta-lactamase domain protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AEI9_9CLOT
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:CCX37786.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Metal-dependent hydrolases of the beta-lactamase superfamily I
L2_047_000M1_scaffold_415_14
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

12042..12515
DNA (474bp) protein (158aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YG94_9FIRM
hypothetical protein
L2_047_000M1_scaffold_415_15
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12775..13851)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CNP6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA77295.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
L2_047_000M1_scaffold_415_16
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14058..15377)
DNA (1320bp) protein (440aa)
alginate O-acetyltransferase (EC:2.3.1.-)
MBOAT family protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CWQ5_9CLOT
MBOAT family protein {ECO:0000313|EMBL:CDA77294.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
L2_047_000M1_scaffold_415_17
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15550..16134)
DNA (585bp) protein (195aa)
Putative ribonuclease M5 n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6P7_9FIRM
TOPRIM domain-containing protein
Putative ribonuclease M5 {ECO:0000313|EMBL:EDS12872.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L2_047_000M1_scaffold_415_18
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16131..17186)
DNA (1056bp) protein (352aa)
DNA polymerase III, delta subunit n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LHY5_9FIRM
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EOS58193.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
DNA polymerase III, delta subunit
L2_047_000M1_scaffold_415_19
RIFOXYB2_FULL_WOR_1_48_7_curated, WOR-1, Bacteria

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comp(17183..19216)
DNA (2034bp) protein (678aa)
Putative DNA internalization competence protein ComEC/Rec2-like protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E8U2_9CLOT
ComEC/Rec2-like protein
Tax=RIFOXYB2_FULL_WOR_1_48_7_curated
L2_047_000M1_scaffold_415_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19471..21567
DNA (2097bp) protein (699aa)
Putative peptidoglycan binding domain protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S7W1_9FIRM
Putative peptidoglycan binding domain protein {ECO:0000313|EMBL:EDP22566.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Putative peptidoglycan-binding domain-containing protein
L2_047_000M1_scaffold_415_21
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

comp(21761..23149)
DNA (1389bp) protein (463aa)
PTS system galactitol-specific IIC component n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C1C6_9FIRM
PTS system galactitol-specific IIC component {ECO:0000313|EMBL:CDD71876.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
putative galactitol-specific phosphotransferase system enzyme IIC component
L2_047_000M1_scaffold_415_22
unknown

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23409..23588
DNA (180bp) protein (60aa)

This feature has no annotations

L2_047_000M1_scaffold_415_23
unknown

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23664..23774
DNA (111bp) protein (37aa)

This feature has no annotations

L2_047_000M1_scaffold_415_24
unknown

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comp(23846..24223)
DNA (378bp) protein (126aa)

This feature has no annotations

L2_047_000M1_scaffold_415_25
unknown

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comp(24243..24506)
DNA (264bp) protein (88aa)

This feature has no annotations

L2_047_000M1_scaffold_415_26
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


25419..28049
DNA (2631bp) protein (877aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LST3_9FIRM
L2_047_000M1_scaffold_415_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28245..28577
DNA (333bp) protein (111aa)
Hit-like protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDP4_9FIRM
Hit-like protein {ECO:0000313|EMBL:EGJ46940.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
HIT family protein
L2_047_000M1_scaffold_415_28
unknown

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28686..29216
DNA (531bp) protein (177aa)

This feature has no annotations

L2_047_000M1_scaffold_415_29
unknown

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29188..29676
DNA (489bp) protein (163aa)

This feature has no annotations

L2_047_000M1_scaffold_415_30
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29699..31636
DNA (1938bp) protein (646aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
threonyl-tRNA synthetase/Ser-tRNA(Thr) hydrolase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FCR7_9FIRM
Displaying items 1-30 of 81 in total

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