ggKbase home page

L2_047_000M1_scaffold_426

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_426_1
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(3..107)
DNA (105bp) protein (35aa)
50S ribosomal protein L27 n=1 Tax=Alistipes sp. JC136 RepID=UPI000289D3CF
LSU ribosomal protein L27P
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L2_047_000M1_scaffold_426_2
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


comp(128..439)
DNA (312bp) protein (104aa)
50S ribosomal protein L21 n=2 Tax=Alistipes RepID=D4ILJ6_9BACT
LSU ribosomal protein L21P
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L2_047_000M1_scaffold_426_3
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

593..961
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:53 RepID=R5WVT6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCZ96592.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
L2_047_000M1_scaffold_426_4
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

958..1902
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Alistipes senegalensis RepID=UPI00031E74A9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL76565.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L2_047_000M1_scaffold_426_5
Alistipes finegoldii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1899..2819
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Alistipes sp. JC136 RepID=UPI000289A76F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL76564.1}; TaxID=679935 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG; 46020 / CIP 107999).;"
L2_047_000M1_scaffold_426_6
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2865..3749
DNA (885bp) protein (295aa)
3'(2'),5'-bisphosphate nucleotidase, bacterial n=2 Tax=Alistipes RepID=D4ILJ7_9BACT
3'(2'),5'-bisphosphate nucleotidase, bacterial
3'(2'),5'-bisphosphate nucleotidase, bacterial {ECO:0000313|EMBL:CBK63809.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L2_047_000M1_scaffold_426_7
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3882..4151)
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=Alistipes RepID=R5W2J7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCZ96870.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
hypothetical protein
L2_047_000M1_scaffold_426_8
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4281..5621
DNA (1341bp) protein (447aa)
K+ transport systems, NAD-binding component n=2 Tax=Alistipes RepID=D4ILJ9_9BACT
K+ transport systems, NAD-binding component
K+ transport systems, NAD-binding component {ECO:0000313|EMBL:CBK63811.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L2_047_000M1_scaffold_426_9
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5672..7147
DNA (1476bp) protein (492aa)
GH3 auxin-responsive promoter n=1 Tax=Alistipes sp. CAG:53 RepID=R5WWL8_9BACT
GH3 auxin-responsive promoter {ECO:0000313|EMBL:CCZ96872.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
GH3 auxin-responsive promoter.
L2_047_000M1_scaffold_426_10
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7386..7727
DNA (342bp) protein (114aa)
Deoxynucleoside kinases n=1 Tax=Alistipes sp. CAG:53 RepID=R5W162_9BACT
Deoxynucleoside kinases {ECO:0000313|EMBL:CCZ96873.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
Deoxynucleoside kinases
L2_047_000M1_scaffold_426_11
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7724..7900
DNA (177bp) protein (59aa)
Deoxynucleoside kinases n=1 Tax=Alistipes sp. CAG:53 RepID=R5W162_9BACT
Deoxynucleoside kinases
Deoxynucleoside kinases {ECO:0000313|EMBL:CCZ96873.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L2_047_000M1_scaffold_426_12
Alistipes sp. HGB5, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7904..9328
DNA (1425bp) protein (475aa)
rRNA cytosine-C5-methylase n=1 Tax=Alistipes sp. JC136 RepID=UPI000289C204
NOL1/NOP2/sun family protein {ECO:0000313|EMBL:EFR56500.1}; TaxID=908612 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes sp. HGB5.;"
tRNA/rRNA cytosine-C5-methylase
L2_047_000M1_scaffold_426_13
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9331..9966
DNA (636bp) protein (212aa)
Predicted transcriptional regulators n=1 Tax=Alistipes sp. CAG:53 RepID=R5WLZ4_9BACT
Predicted transcriptional regulators {ECO:0000313|EMBL:CCZ96881.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
Predicted transcriptional regulators
L2_047_000M1_scaffold_426_14
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10168..10953
DNA (786bp) protein (262aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Alistipes shahii WAL 8301 RepID=D4ILK3_9BACT
conserved hypothetical protein TIGR00486
L2_047_000M1_scaffold_426_15
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10976..11737
DNA (762bp) protein (254aa)
Zn-ribbon protein, possibly nucleic acid-binding n=1 Tax=Alistipes shahii WAL 8301 RepID=D4ILK4_9BACT
Zn-ribbon protein, possibly nucleic acid-binding
Zn-ribbon protein, possibly nucleic acid-binding {ECO:0000313|EMBL:CBK63816.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L2_047_000M1_scaffold_426_16
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11906..13486
DNA (1581bp) protein (527aa)
NAD+ synthetase {ECO:0000313|EMBL:CBK63817.1}; EC=6.3.5.1 {ECO:0000313|EMBL:CBK63817.1};; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
NAD+ synthetase (EC:6.3.5.1)
NAD+ synthetase n=1 Tax=Alistipes shahii WAL 8301 RepID=D4ILK5_9BACT
L2_047_000M1_scaffold_426_17
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13490..13909
DNA (420bp) protein (140aa)
Positive regulator of sigma E activity n=1 Tax=Alistipes sp. CAG:53 RepID=R5WUB3_9BACT
Positive regulator of sigma E activity {ECO:0000313|EMBL:CCZ96047.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
Positive regulator of sigma E activity
L2_047_000M1_scaffold_426_18
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13909..14808
DNA (900bp) protein (300aa)
Electron transport complex, RnfABCDGE type, B subunit n=2 Tax=Alistipes RepID=D4ILK6_9BACT
electron transport complex, RnfABCDGE type, B subunit
Electron transport complex RnfABCDGE type B subunit {ECO:0000313|EMBL:CCZ96048.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L2_047_000M1_scaffold_426_19
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15023..16354
DNA (1332bp) protein (444aa)
Electron transport complex RnfABCDGE type C subunit n=1 Tax=Alistipes sp. CAG:53 RepID=R5W7F5_9BACT
Electron transport complex subunit C {ECO:0000256|HAMAP-Rule:MF_00461}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
electron transport complex, RnfABCDGE type, C subunit
L2_047_000M1_scaffold_426_20
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16374..17402
DNA (1029bp) protein (343aa)
Electron transport complex, RnfABCDGE type, D subunit n=2 Tax=Alistipes RepID=D4ILK8_9BACT
electron transport complex, RnfABCDGE type, D subunit
Electron transport complex subunit D {ECO:0000256|HAMAP-Rule:MF_00462}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L2_047_000M1_scaffold_426_21
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17417..18079
DNA (663bp) protein (221aa)
Electron transport complex RnfABCDGE type G subunit n=1 Tax=Alistipes sp. CAG:53 RepID=R5WJR7_9BACT
Electron transport complex subunit G {ECO:0000256|HAMAP-Rule:MF_00479}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
electron transport complex, RnfABCDGE type, G subunit
L2_047_000M1_scaffold_426_22
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18072..18656
DNA (585bp) protein (195aa)
Electron transport complex, RnfABCDGE type, E subunit n=2 Tax=Alistipes RepID=D4ILL0_9BACT
electron transport complex, RnfABCDGE type, E subunit
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L2_047_000M1_scaffold_426_23
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18659..19237
DNA (579bp) protein (193aa)
Electron transport complex, RnfABCDGE type, A subunit n=2 Tax=Alistipes RepID=D4ILL1_9BACT
electron transport complex, RnfABCDGE type, A subunit
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L2_047_000M1_scaffold_426_24
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(19457..20008)
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Alistipes RepID=R5W7G0_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK63848.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L2_047_000M1_scaffold_426_25
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20015..21328)
DNA (1314bp) protein (438aa)
Uncharacterized protein n=2 Tax=Alistipes RepID=R5W049_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK63849.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L2_047_000M1_scaffold_426_26
Alistipes shahii, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21342..28790)
DNA (7449bp) protein (2483aa)
Putative uncharacterized protein n=1 Tax=Alistipes shahii WAL 8301 RepID=D4ILN8_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK63850.1}; TaxID=717959 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes.;" source="Alistipes shahii WAL 8301.;"
L2_047_000M1_scaffold_426_27
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28780..34890)
DNA (6111bp) protein (2037aa)
Signal transduction protein n=1 Tax=Alistipes sp. CAG:53 RepID=R5VYX4_9BACT
Signal transduction protein {ECO:0000313|EMBL:CCZ96083.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
L2_047_000M1_scaffold_426_28
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35260..35799
DNA (540bp) protein (180aa)
Putative RNA polymerase ECF-type sigma factor n=1 Tax=Alistipes sp. CAG:53 RepID=R5W068_9BACT
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:CCZ96085.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
RNA polymerase, sigma-24 subunit, ECF subfamily
L2_047_000M1_scaffold_426_29
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35863..36939
DNA (1077bp) protein (359aa)
Anti-FecI sigma factor FecR n=1 Tax=Alistipes sp. CAG:53 RepID=R5WJU5_9BACT
Anti-FecI sigma factor FecR {ECO:0000313|EMBL:CCZ96086.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
anti-FecI sigma factor, FecR
L2_047_000M1_scaffold_426_30
Alistipes sp. CAG:53, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36990..40331
DNA (3342bp) protein (1114aa)
TonB-dependent receptor plug n=1 Tax=Alistipes sp. CAG:53 RepID=R5WUD9_9BACT
TonB-dependent receptor plug {ECO:0000313|EMBL:CCZ96087.1}; TaxID=1262697 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:53.;"
TonB-dependent receptor plug
Displaying items 1-30 of 47 in total

View Taxonomy