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L2_047_000M1_scaffold_560

Search features with annotation key words

Displaying items 1-30 of 87 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_560_1
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

403..2523
DNA (2121bp) protein (707aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBT7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75415.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
methyl-accepting chemotaxis protein
L2_047_000M1_scaffold_560_2
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2726..3232
DNA (507bp) protein (169aa)
SEC-C motif domain protein n=2 Tax=root RepID=R7CB41_9CLOT
SEC-C motif domain protein {ECO:0000313|EMBL:CDD75414.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Predicted metal-binding protein related to the C-terminal domain of SecA
L2_047_000M1_scaffold_560_3
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3369..4727
DNA (1359bp) protein (453aa)
MATE efflux family protein DinF n=1 Tax=Clostridium sp. CAG:62 RepID=R7CDK6_9CLOT
MATE efflux family protein DinF {ECO:0000313|EMBL:CDD75413.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
putative efflux protein, MATE family
L2_047_000M1_scaffold_560_4
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5161..6012)
DNA (852bp) protein (284aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
metF; 5,10-methylenetetrahydrofolate reductase MetF (EC:1.5.1.20)
Methylenetetrahydrofolate reductase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CCG0_9CLOT
L2_047_000M1_scaffold_560_5
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6113..7603)
DNA (1491bp) protein (497aa)
alpha-N-arabinofuranosidase (EC:3.2.1.55)
Alpha-N-arabinofuranosidase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBE6_9CLOT
Alpha-N-arabinofuranosidase {ECO:0000313|EMBL:CDD75411.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L2_047_000M1_scaffold_560_6
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7695..8981)
DNA (1287bp) protein (429aa)
Beta-xylanase {ECO:0000256|RuleBase:RU361174}; EC=3.2.1.8 {ECO:0000256|RuleBase:RU361174};; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
endo-1,4-beta-xylanase (EC:3.2.1.8)
Endo-1 4-beta-xylanase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBT2_9CLOT
L2_047_000M1_scaffold_560_7
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8968..10212)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CB38_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75409.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
acyltransferase
L2_047_000M1_scaffold_560_8
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10225..11202)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CDK0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75408.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
phosphate acetyltransferase
L2_047_000M1_scaffold_560_9
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11730..12398)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBS7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75405.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_047_000M1_scaffold_560_10
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12395..14080)
DNA (1686bp) protein (562aa)
Na/Pi-cotransporter n=1 Tax=Clostridium sp. CAG:62 RepID=R7CB34_9CLOT
Na/Pi-cotransporter {ECO:0000313|EMBL:CDD75404.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Na/Pi-cotransporter
L2_047_000M1_scaffold_560_11
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14243..15964
DNA (1722bp) protein (574aa)
ABC-type multidrug transport system ATPase and permease components n=1 Tax=Clostridium sp. CAG:62 RepID=R7CDJ5_9CLOT
ABC-type multidrug transport system ATPase and permease components {ECO:0000313|EMBL:CDD75403.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
ABC-type multidrug transport system, ATPase and permease components
L2_047_000M1_scaffold_560_12
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15965..17125)
DNA (1161bp) protein (387aa)
ABC-type multidrug transport system permease component n=1 Tax=Clostridium sp. CAG:62 RepID=R7CCF0_9CLOT
ABC-type multidrug transport system permease component {ECO:0000313|EMBL:CDD75402.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
ABC-type multidrug transport system, permease component
L2_047_000M1_scaffold_560_13
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17112..18245)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBD9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75401.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_047_000M1_scaffold_560_14
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18260..19201)
DNA (942bp) protein (314aa)
ABC transporter-like protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBS2_9CLOT
ABC transporter-like protein {ECO:0000313|EMBL:CDD75400.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
ABC transporter-like protein
L2_047_000M1_scaffold_560_15
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19359..20420
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CB30_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75399.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
integral membrane sensor signal transduction histidine kinase
L2_047_000M1_scaffold_560_16
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20423..21040
DNA (618bp) protein (206aa)
Response regulator receiver domain protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CDJ1_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:CDD75398.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
two component transcriptional regulator
L2_047_000M1_scaffold_560_17
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21031..22215)
DNA (1185bp) protein (395aa)
Pyridoxal-phosphate-dependent aminotransferase family n=1 Tax=Clostridium sp. CAG:62 RepID=R7CCE5_9CLOT
Pyridoxal-phosphate-dependent aminotransferase family {ECO:0000313|EMBL:CDD75397.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
aspartate aminotransferase
L2_047_000M1_scaffold_560_18
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22231..23025)
DNA (795bp) protein (265aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBD4_9CLOT
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CDD75396.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L2_047_000M1_scaffold_560_19
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23637..24965)
DNA (1329bp) protein (443aa)
Putative efflux protein MATE family n=1 Tax=Roseburia sp. CAG:100 RepID=R7R8Q7_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CDF46120.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
putative efflux protein, MATE family
L2_047_000M1_scaffold_560_20
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24969..25901)
DNA (933bp) protein (311aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
tRNA-dihydrouridine synthase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CB08_9CLOT
dihydrouridine synthase
L2_047_000M1_scaffold_560_21
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25898..26674)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CDG9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75373.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_047_000M1_scaffold_560_22
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26668..28050)
DNA (1383bp) protein (461aa)
Radical SAM domain protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CCC6_9CLOT
Radical SAM domain protein {ECO:0000313|EMBL:CDD75372.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Predicted DNA-binding protein with the Helix-hairpin-helix motif
L2_047_000M1_scaffold_560_23
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28204..29577)
DNA (1374bp) protein (458aa)
Citrate transporter n=3 Tax=root RepID=R7CBB6_9CLOT
Citrate transporter {ECO:0000313|EMBL:CDD75371.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
arsenical pump membrane protein
L2_047_000M1_scaffold_560_24
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29617..30819)
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBQ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75370.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
sodium/proton-potassium antiporter GerN, CPA2 family (TC 2.A.37.2.2)
L2_047_000M1_scaffold_560_25
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31009..32391)
DNA (1383bp) protein (461aa)
Tryptophan synthase {ECO:0000256|SAAS:SAAS00015859}; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859};; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
pyridoxal-phosphate dependent TrpB-like enzyme (EC:4.2.1.20)
Pyridoxal-phosphate dependent TrpB-like enzyme n=1 Tax=Clostridium sp. CAG:62 RepID=R7CB05_9CLOT
L2_047_000M1_scaffold_560_26
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32478..33359)
DNA (882bp) protein (294aa)
Transcriptional regulator n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBB2_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:CDD75366.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Transcriptional regulator
L2_047_000M1_scaffold_560_27
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33412..36804)
DNA (3393bp) protein (1131aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBP6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75365.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
type I restriction-modification system R subunit (endonuclease)
L2_047_000M1_scaffold_560_28
Clostridium sp. CAG:230, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37699..38781)
DNA (1083bp) protein (361aa)
Restriction endonuclease S subunits (EC:3.1.21.3)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:230 RepID=R6DUQ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA88609.1}; TaxID=1262782 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:230.;"
L2_047_000M1_scaffold_560_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38929..39897)
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5L7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22031.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Site-specific recombinase XerD
L2_047_000M1_scaffold_560_30
Lactococcus lactis, Lactococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(40097..41242)
DNA (1146bp) protein (382aa)
Putative type IC HsdS subunit n=1 Tax=Lactococcus lactis subsp. lactis A12 RepID=S6FTS2_LACLL
Putative type IC HsdS subunit {ECO:0000313|EMBL:CDG04847.1}; TaxID=1137134 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus.;" source="Lactococcus lactis subsp. lactis A12.;"
restriction modification system DNA specificity domain-containing protein
Displaying items 1-30 of 87 in total

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