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L2_047_000M1_scaffold_594

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_594_1
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..1678
DNA (1677bp) protein (559aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5INV1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY43765.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ATP-dependent transcriptional regulator-like protein
L2_047_000M1_scaffold_594_2
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1754..3247
DNA (1494bp) protein (498aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HWY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY34240.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L2_047_000M1_scaffold_594_3
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3541..4815
DNA (1275bp) protein (425aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase RluA family n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IAX6_9FIRM
L2_047_000M1_scaffold_594_4
Selenomonas sp. oral taxon 149, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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4812..5324
DNA (513bp) protein (171aa)
HD domain protein n=1 Tax=Selenomonas sp. oral taxon 149 str. 67H29BP RepID=E0NZD8_9FIRM
HD domain protein {ECO:0000313|EMBL:EFM23210.1}; TaxID=864563 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. oral taxon 149 str. 67H29BP.;"
HD domain.
L2_047_000M1_scaffold_594_5
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5596..5949
DNA (354bp) protein (118aa)
Transcriptional regulator PadR family n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HW90_9FIRM
Transcriptional regulator PadR family {ECO:0000313|EMBL:CCY34083.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
transcriptional regulator, PadR family
L2_047_000M1_scaffold_594_6
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5955..6680
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IAX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY34082.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Protein of unknown function (DUF1700).
L2_047_000M1_scaffold_594_7
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6677..7543
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IBE9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY34081.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Protein of unknown function (DUF2807).
L2_047_000M1_scaffold_594_8
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7637..7822
DNA (186bp) protein (62aa)
Putative stress-responsive transcriptional regulator n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I132_9FIRM
Putative stress-responsive transcriptional regulator {ECO:0000313|EMBL:CCY34079.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Putative stress-responsive transcriptional regulator
L2_047_000M1_scaffold_594_9
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8030..8218
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HW88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY34078.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Small, acid-soluble spore proteins, alpha/beta type.
L2_047_000M1_scaffold_594_10
unknown

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8342..8431
DNA (90bp) protein (30aa)

This feature has no annotations

L2_047_000M1_scaffold_594_11
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8599..9474
DNA (876bp) protein (292aa)
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Pyridoxal biosynthesis lyase PdxS n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HWK1_9FIRM
pyridoxal biosynthesis lyase pdxS
L2_047_000M1_scaffold_594_12
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9476..10075
DNA (600bp) protein (200aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Glutamine amidotransferase subunit PdxT n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I128_9FIRM
pyridoxal phosphate synthase yaaE subunit
L2_047_000M1_scaffold_594_13
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10249..11553
DNA (1305bp) protein (435aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine sulfhydrolase n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HW84_9FIRM
O-acetylhomoserine sulfhydrolase {ECO:0000313|EMBL:CCY34073.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L2_047_000M1_scaffold_594_14
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11875..13557
DNA (1683bp) protein (561aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IAW5_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:CCY34072.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
L2_047_000M1_scaffold_594_15
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13883..14158
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IBE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY34071.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
VTC domain superfamily
L2_047_000M1_scaffold_594_16
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14112..14579
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5IBE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY34071.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L2_047_000M1_scaffold_594_17
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14690..15361
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HWJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY34070.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
tubulin/FtsZ, GTPase
L2_047_000M1_scaffold_594_18
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15499..17400
DNA (1902bp) protein (634aa)
Spore coat protein CotH n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I123_9FIRM
Spore coat protein CotH {ECO:0000313|EMBL:CCY34069.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
CotH protein
L2_047_000M1_scaffold_594_19
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17695..18666
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HW83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY34068.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L2_047_000M1_scaffold_594_20
unknown

Not on your lists

18666..18785
DNA (120bp) protein (40aa)

This feature has no annotations

L2_047_000M1_scaffold_594_21
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18920..19636
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HW92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32419.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
ABC-type antimicrobial peptide transport system, ATPase component
L2_047_000M1_scaffold_594_22
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19644..23714
DNA (4071bp) protein (1357aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HRR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32420.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Predicted permease.
L2_047_000M1_scaffold_594_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


24178..26829
DNA (2652bp) protein (884aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
valyl-tRNA synthetase (EC:6.1.1.9)
valyl-tRNA synthase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI000302306D
L2_047_000M1_scaffold_594_24
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26844..28856
DNA (2013bp) protein (671aa)
Phosphoglycerol transferase and related proteins alkaline phosphatase superfamily n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I600_9FIRM
Phosphoglycerol transferase and related proteins alkaline phosphatase superfamily {ECO:0000313|EMBL:CCY32422.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
L2_047_000M1_scaffold_594_25
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29232..30524
DNA (1293bp) protein (431aa)
folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I605_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32427.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L2_047_000M1_scaffold_594_26
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30586..30738
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HRQ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY32428.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
hypothetical protein
L2_047_000M1_scaffold_594_27
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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30754..32118
DNA (1365bp) protein (455aa)
Tetratricopeptide repeat protein n=1 Tax=Ruminococcus obeum CAG:39 RepID=R7D5P3_9FIRM
Tetratricopeptide repeat protein {ECO:0000313|EMBL:CDD85536.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
hypothetical protein
L2_047_000M1_scaffold_594_28
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32242..32586
DNA (345bp) protein (115aa)
Anti-sigma factor antagonist n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I8N2_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
anti-anti-sigma factor
L2_047_000M1_scaffold_594_29
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32586..33011
DNA (426bp) protein (142aa)
anti-sigma F factor (EC:2.7.11.1)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5I964_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY33346.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
L2_047_000M1_scaffold_594_30
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33024..33746
DNA (723bp) protein (241aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus sp. CAG:60 RepID=R5HUD2_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-B/F/G subfamily
Displaying items 1-30 of 35 in total

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