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L2_047_000M1_scaffold_623

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_623_1
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..387)
DNA (387bp) protein (129aa)
RHS repeat-associated core domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M6P6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EWM52590.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
L2_047_000M1_scaffold_623_2
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(734..2578)
DNA (1845bp) protein (615aa)
dgt; Putative dGTPase (EC:3.1.5.1)
Putative dGTPase n=1 Tax=Desulfitobacterium hafniense DP7 RepID=G9XPY8_DESHA
Putative dGTPase {ECO:0000313|EMBL:EHL06282.1}; TaxID=537010 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense DP7.;"
L2_047_000M1_scaffold_623_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3528..5051)
DNA (1524bp) protein (508aa)
xylB; Xylulokinase (EC:2.7.1.17)
Xylulokinase {ECO:0000313|EMBL:CCO05434.1}; EC=2.7.1.17 {ECO:0000313|EMBL:CCO05434.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Xylulokinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFP8_9FIRM
L2_047_000M1_scaffold_623_4
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5305..6630)
DNA (1326bp) protein (442aa)
Xylose isomerase {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609}; EC=5.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00455, ECO:0000256|RuleBase:RU000609};; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
xylA; xylose isomerase (EC:5.3.1.5)
Xylose isomerase n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5VH89_9FIRM
L2_047_000M1_scaffold_623_5
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6652..8730)
DNA (2079bp) protein (693aa)
Xyl3A n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L2C9_9FIRM
Xyl3A {ECO:0000313|EMBL:CDE82148.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
glycoside hydrolase family protein
L2_047_000M1_scaffold_623_6
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8755..9681)
DNA (927bp) protein (309aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L0E4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE82149.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L2_047_000M1_scaffold_623_7
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9936..10775
DNA (840bp) protein (280aa)
Transcriptional regulator AraC family n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L0I7_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDE82150.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
AraC family transcriptional regulator
L2_047_000M1_scaffold_623_8
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11215..13515
DNA (2301bp) protein (767aa)
Endoglucanase E; Short=EGE;; EC=3.2.1.4;; Cellulase; Endo-1,4-beta-glucanase E; Flags: Precursor;; TaxID=1265 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens.;"
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37375
L2_047_000M1_scaffold_623_9
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13466..15106
DNA (1641bp) protein (547aa)
Dockerin type I repeat n=1 Tax=Ruminococcus sp. CAG:379 RepID=R6ZWI0_9FIRM
Dockerin type I repeat.
Dockerin type I repeat {ECO:0000313|EMBL:CBL17224.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L2_047_000M1_scaffold_623_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15288..15662
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37E37
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO06174.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_047_000M1_scaffold_623_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15677..16069)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T755_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04658.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L2_047_000M1_scaffold_623_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16165..16458)
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PX98_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23066.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_047_000M1_scaffold_623_13
unknown

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comp(16483..17166)
DNA (684bp) protein (228aa)

This feature has no annotations

L2_047_000M1_scaffold_623_14
Clostridium sp. CAG:465, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17266..18051)
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:465 RepID=R6TY52_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC78403.1}; TaxID=1262811 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:465.;"
hypothetical protein
L2_047_000M1_scaffold_623_15
Coprococcus sp. ART55/1, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18097..18558)
DNA (462bp) protein (154aa)
Putative uncharacterized protein n=1 Tax=Coprococcus sp. ART55/1 RepID=D5HFH1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK83654.1}; TaxID=751585 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. ART55/1.;"
L2_047_000M1_scaffold_623_16
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18591..19697)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NVI2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ08180.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
hypothetical protein
L2_047_000M1_scaffold_623_17
unknown

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comp(19777..19881)
DNA (105bp) protein (35aa)

This feature has no annotations

L2_047_000M1_scaffold_623_18
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19863..20306)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9J0G7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EXM39746.1}; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
hypothetical protein
L2_047_000M1_scaffold_623_19
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20374..20535)
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UD36_RUMA7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU20830.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L2_047_000M1_scaffold_623_20
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20666..21088)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K6V9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN42100.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L2_047_000M1_scaffold_623_21
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21443..21694
DNA (252bp) protein (84aa)
Putative phage integrase n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5V0F2_9FIRM
Putative phage integrase {ECO:0000313|EMBL:CCZ84058.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
L2_047_000M1_scaffold_623_22
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22210..22839)
DNA (630bp) protein (210aa)
Putative SAM-dependent methyltransferase n=1 Tax=Pediococcus claussenii (strain ATCC BAA-344 / DSM 14800 / JCM 18046 / KCTC 3811 / P06) PF27_PEDCP">RepID=G8PF27_PEDCP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY85236.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L2_047_000M1_scaffold_623_23
unknown

Not on your lists

comp(23299..24063)
DNA (765bp) protein (255aa)
hypothetical protein
L2_047_000M1_scaffold_623_24
Natranaerobius thermophilus, Natranaerobius, Natranaerobiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24235..25524)
DNA (1290bp) protein (430aa)
Radical SAM domain protein n=1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A0X4_NATTJ
radical SAM protein
Radical SAM domain protein {ECO:0000313|EMBL:ACB86003.1}; TaxID=457570 species="Bacteria; Firmicutes; Clostridia; Natranaerobiales; Natranaerobiaceae; Natranaerobius.;" source="Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 /; JW/NM-WN-LF).;"
L2_047_000M1_scaffold_623_25
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25496..25798)
DNA (303bp) protein (101aa)
IS66 Orf2 family protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UKR6_RUMA7
IS66 Orf2 family protein
IS66 Orf2 family protein {ECO:0000313|EMBL:ADU24262.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L2_047_000M1_scaffold_623_26
unknown

Not on your lists

comp(25923..26036)
DNA (114bp) protein (38aa)

This feature has no annotations

L2_047_000M1_scaffold_623_27
unknown

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comp(26253..26651)
DNA (399bp) protein (133aa)

This feature has no annotations

L2_047_000M1_scaffold_623_28
unknown

Not on your lists

comp(26652..26762)
DNA (111bp) protein (37aa)

This feature has no annotations

L2_047_000M1_scaffold_623_29
CG_Cyano_01, Cyanobacteria, Bacteria

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comp(26874..28466)
DNA (1593bp) protein (531aa)
hypothetical protein n=1 Tax=cyanobacterium PCC 7702 RepID=UPI0003784639
intergral membrane protein kinase
Tax=CG_Cyano_01
L2_047_000M1_scaffold_623_30
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28459..29865)
DNA (1407bp) protein (469aa)
Uncharacterized protein n=3 Tax=root RepID=A5Z6S0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM51496.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
Displaying items 1-30 of 36 in total

View Taxonomy