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L2_047_000M1_scaffold_668

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_668_1
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(220..2637)
DNA (2418bp) protein (806aa)
Endo-1 4-beta-xylanase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C8S1_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM69887.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
L2_047_000M1_scaffold_668_2
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2745..3599)
DNA (855bp) protein (285aa)
Transcriptional regulator AraC family n=1 Tax=Clostridium sp. CAG:62 RepID=R7CA45_9CLOT
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDD74602.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
DNA-binding domain-containing protein
L2_047_000M1_scaffold_668_3
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4190..5212)
DNA (1023bp) protein (341aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBA9_9CLOT
L2_047_000M1_scaffold_668_4
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5238..5840)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C8V3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74604.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_047_000M1_scaffold_668_5
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5862..6782)
DNA (921bp) protein (307aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
ribonuclease Z (EC:3.1.26.11)
Ribonuclease Z n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9G8_9CLOT
L2_047_000M1_scaffold_668_6
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6840..7055)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C917_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74606.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_047_000M1_scaffold_668_7
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7106..7825)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CA51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74607.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Inactive homolog of metal-dependent proteases, putative molecular chaperone
L2_047_000M1_scaffold_668_8
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7828..8256)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBB3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74608.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_047_000M1_scaffold_668_9
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8253..8729)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C8V8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74609.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_047_000M1_scaffold_668_10
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8854..11007
DNA (2154bp) protein (718aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:167 RepID=R5VU67_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ91349.1}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
hypothetical protein
L2_047_000M1_scaffold_668_11
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11010..12143)
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C922_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74611.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L2_047_000M1_scaffold_668_12
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12158..14299)
DNA (2142bp) protein (714aa)
Tex-like protein N-terminal domain protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CA56_9CLOT
Tex-like protein N-terminal domain protein {ECO:0000313|EMBL:CDD74612.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Transcriptional accessory protein
L2_047_000M1_scaffold_668_13
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14790..16700)
DNA (1911bp) protein (637aa)
Type I secretion target GGXGXDXXX repeat (2 copies) n=1 Tax=Roseburia sp. CAG:309 RepID=R6YPL3_9FIRM
Type I secretion target GGXGXDXXX repeat (2 copies) {ECO:0000313|EMBL:CDD35800.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
hypothetical protein
L2_047_000M1_scaffold_668_14
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17005..17406)
DNA (402bp) protein (134aa)
HEPN domain protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LAE2_9FIRM
HEPN domain protein {ECO:0000313|EMBL:EET62549.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
HEPN domain-containing protein
L2_047_000M1_scaffold_668_15
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17399..17737)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MN52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS72096.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
DNA polymerase, beta domain-containing protein
L2_047_000M1_scaffold_668_16
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17948..20584)
DNA (2637bp) protein (879aa)
pyruvate, phosphate dikinase (EC:2.7.9.1)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBB7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74613.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L2_047_000M1_scaffold_668_17
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20864..21700
DNA (837bp) protein (279aa)
DegV family protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C8W3_9CLOT
DegV family protein {ECO:0000313|EMBL:CDD74614.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
degV family protein
L2_047_000M1_scaffold_668_18
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21747..24971
DNA (3225bp) protein (1075aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large subunit n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9H7_9CLOT
L2_047_000M1_scaffold_668_19
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25058..25861)
DNA (804bp) protein (268aa)
VanZ like protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C925_9CLOT
VanZ like protein {ECO:0000313|EMBL:CDD74616.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
L2_047_000M1_scaffold_668_20
unknown

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comp(25894..26268)
DNA (375bp) protein (125aa)

This feature has no annotations

L2_047_000M1_scaffold_668_21
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26747..28018)
DNA (1272bp) protein (424aa)
Histidine kinase-DNA gyrase B-and HSP90-like ATPase n=1 Tax=Clostridium sp. CAG:62 RepID=R7CBC2_9CLOT
Histidine kinase-DNA gyrase B-and HSP90-like ATPase {ECO:0000313|EMBL:CDD74618.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L2_047_000M1_scaffold_668_22
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28020..28739)
DNA (720bp) protein (240aa)
Lin0801 protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C8W8_9CLOT
Lin0801 protein {ECO:0000313|EMBL:CDD74619.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_047_000M1_scaffold_668_23
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28762..29601)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7C9I0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD74620.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_047_000M1_scaffold_668_24
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(29610..31007)
DNA (1398bp) protein (466aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Glycine--tRNA ligase n=1 Tax=Clostridium sp. CAG:62 RepID=R7C928_9CLOT
glycyl-tRNA synthetase
L2_047_000M1_scaffold_668_25
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31315..31821)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JW56_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68194.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
hypothetical protein
L2_047_000M1_scaffold_668_26

Not on your lists

comp(31829..32188)
DNA (360bp) protein (120aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1TGD0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC68838.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L2_047_000M1_scaffold_668_27
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32731..33435)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CCL7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75068.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
hypothetical protein
L2_047_000M1_scaffold_668_28
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33435..33896)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CA64_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75069.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
LytR family transcriptional regulator
L2_047_000M1_scaffold_668_29
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34005..34739)
DNA (735bp) protein (245aa)
DNA repair protein RecO n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAU4_9CLOT
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
DNA repair protein RecO
L2_047_000M1_scaffold_668_30
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34690..34866)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:62 RepID=R7CAC4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD75071.1}; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
Displaying items 1-30 of 51 in total

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