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L2_047_000M1_scaffold_1060

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_1060_1
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..583
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=8 Tax=unclassified Lachnospiraceae RepID=E5XKE9_9FIRM
Transposase {ECO:0000313|EMBL:ERK51210.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L2_047_000M1_scaffold_1060_2
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(527..1117)
DNA (591bp) protein (197aa)
Accessory gene regulator B n=3 Tax=Eubacterium RepID=D4JNP0_9FIRM
Accessory gene regulator B.
Accessory gene regulator B {ECO:0000313|EMBL:CBK90575.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L2_047_000M1_scaffold_1060_3
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1229..2533)
DNA (1305bp) protein (435aa)
Histidine kinase-DNA gyrase B-and HSP90-like ATPase n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TXJ9_9FIRM
Histidine kinase-DNA gyrase B-and HSP90-like ATPase {ECO:0000313|EMBL:CDC74529.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L2_047_000M1_scaffold_1060_4
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2537..3262)
DNA (726bp) protein (242aa)
Response regulator of the LytR/AlgR family n=1 Tax=Eubacterium rectale M104/1 RepID=D4JNP2_9FIRM
Response regulator of the LytR/AlgR family
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CBK94711.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L2_047_000M1_scaffold_1060_5
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3396..4649)
DNA (1254bp) protein (418aa)
Peptidase U32 n=2 Tax=Eubacterium RepID=C4ZAX9_EUBR3
peptidase U32
Peptidase U32 {ECO:0000313|EMBL:CDC74527.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L2_047_000M1_scaffold_1060_6
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4700..5341)
DNA (642bp) protein (214aa)
Predicted O-methyltransferase n=1 Tax=Eubacterium rectale M104/1 RepID=D4JNP4_9FIRM
Predicted O-methyltransferase
Predicted O-methyltransferase {ECO:0000313|EMBL:CBK94713.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
L2_047_000M1_scaffold_1060_7
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5391..5801)
DNA (411bp) protein (137aa)
Predicted periplasmic solute-binding protein n=4 Tax=Eubacterium RepID=D4JNP5_9FIRM
Predicted periplasmic solute-binding protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75636.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_047_000M1_scaffold_1060_8
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5811..7484)
DNA (1674bp) protein (558aa)
Predicted hydrolase of the metallo-beta-lactamase superfamily n=2 Tax=Eubacterium RepID=C4ZAY2_EUBR3
putative hydrolase of the metallo-beta-lactamase superfamily
Predicted hydrolase of the metallo-beta-lactamase superfamily {ECO:0000313|EMBL:CDC74524.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L2_047_000M1_scaffold_1060_9
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7524..7787)
DNA (264bp) protein (88aa)
Uncharacterized protein n=3 Tax=Eubacterium RepID=R6TMC1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75638.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_047_000M1_scaffold_1060_10
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7793..8224)
DNA (432bp) protein (144aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Putative Holliday junction resolvase n=2 Tax=Eubacterium RepID=RUVX_EUBR3
hypothetical protein
L2_047_000M1_scaffold_1060_11
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8226..8492)
DNA (267bp) protein (89aa)
UPF0297 protein EUBREC_1896 n=4 Tax=Eubacterium RepID=C4ZAY5_EUBR3
hypothetical protein
UPF0297 protein BN626_01645 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L2_047_000M1_scaffold_1060_12
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8553..9857)
DNA (1305bp) protein (435aa)
MiaB-like tRNA modifying enzyme (EC:1.3.1.74)
MiaB-like tRNA modifying enzyme {ECO:0000313|EMBL:CBK90623.1}; EC=1.3.1.74 {ECO:0000313|EMBL:CBK90623.1};; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
MiaB-like tRNA modifying enzyme n=2 Tax=Eubacterium RepID=D6E5D3_9FIRM
L2_047_000M1_scaffold_1060_13
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9945..10187
DNA (243bp) protein (81aa)
PTS HPr component phosphorylation site n=4 Tax=Eubacterium RepID=D4JNP9_9FIRM
PTS HPr component phosphorylation site.
Uncharacterized protein {ECO:0000313|EMBL:ACR75643.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_047_000M1_scaffold_1060_14
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10261..11445)
DNA (1185bp) protein (395aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Probable tRNA sulfurtransferase n=1 Tax=Eubacterium rectale CAG:36 RepID=R6UV08_9FIRM
thiazole biosynthesis/tRNA modification protein ThiI
L2_047_000M1_scaffold_1060_15
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11581..12735)
DNA (1155bp) protein (385aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes n=1 Tax=Eubacterium rectale CAG:36 RepID=R6U387_9FIRM
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes {ECO:0000313|EMBL:CDC74516.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
L2_047_000M1_scaffold_1060_16
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12782..13522)
DNA (741bp) protein (247aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZAZ1_EUBR3
hypothetical protein
L2_047_000M1_scaffold_1060_17
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13534..14505)
DNA (972bp) protein (324aa)
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
Ribosomal protein L11 methyltransferase n=1 Tax=Eubacterium rectale CAG:36 RepID=R6TXI9_9FIRM
L2_047_000M1_scaffold_1060_18
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14755..15924)
DNA (1170bp) protein (390aa)
Chaperone protein DnaJ n=3 Tax=Eubacterium RepID=D4JNQ4_9FIRM
chaperone protein DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L2_047_000M1_scaffold_1060_19
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16081..17979)
DNA (1899bp) protein (633aa)
Chaperone protein DnaK n=1 Tax=Eubacterium rectale CAG:36 RepID=R6UV03_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
chaperone protein DnaK
L2_047_000M1_scaffold_1060_20
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17981..18121)
DNA (141bp) protein (47aa)
Putative uncharacterized protein n=2 Tax=Eubacterium rectale RepID=D4JNQ6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK90631.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L2_047_000M1_scaffold_1060_21
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18121..18783)
DNA (663bp) protein (221aa)
Protein GrpE n=1 Tax=Eubacterium rectale DSM 17629 RepID=D6E5E2_9FIRM
Molecular chaperone GrpE (heat shock protein)
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L2_047_000M1_scaffold_1060_22
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18798..19880)
DNA (1083bp) protein (361aa)
Heat-inducible transcription repressor hrcA n=4 Tax=Eubacterium RepID=C4ZAZ8_EUBR3
heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_047_000M1_scaffold_1060_23
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20482..21486)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90A5 RepID=R0C9G7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX86095.1}; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
conserved hypothetical protein/conserved hypothetical protein TIGR02688
L2_047_000M1_scaffold_1060_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21491..22243)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90A5 RepID=R0C9G7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ65560.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
conserved hypothetical protein/conserved hypothetical protein TIGR02688
L2_047_000M1_scaffold_1060_25
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22264..25077)
DNA (2814bp) protein (938aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FAU2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF06433.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
ABC transporter
L2_047_000M1_scaffold_1060_26
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25106..26758)
DNA (1653bp) protein (551aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90A5 RepID=R0ANJ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFV19666.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
conserved hypothetical protein TIGR02687
Displaying 26 items

View Taxonomy