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L2_047_000M1_scaffold_1140

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_1140_1
unknown

Not on your lists

3..200
DNA (198bp) protein (66aa)

This feature has no annotations

L2_047_000M1_scaffold_1140_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(509..901)
DNA (393bp) protein (131aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELK9_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52404.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_047_000M1_scaffold_1140_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1447..2802)
DNA (1356bp) protein (452aa)
Putative ribonuclease n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CHU4_BIFBI
Putative ribonuclease {ECO:0000313|EMBL:ERI84110.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
ribonuclease BN-like family
L2_047_000M1_scaffold_1140_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2824..3381
DNA (558bp) protein (186aa)
thioredoxin peroxidase (EC:1.11.1.15)
Thioredoxin-dependent thiol peroxidase n=6 Tax=Bifidobacterium bifidum RepID=E3ELK6_BIFBS
Peroxiredoxin bcp family protein {ECO:0000313|EMBL:ERI84111.1}; Thioredoxin-dependent thiol peroxidase {ECO:0000313|EMBL:BAQ97374.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_047_000M1_scaffold_1140_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3456..3710)
DNA (255bp) protein (85aa)
ABC transporter related protein n=4 Tax=Bifidobacterium bifidum RepID=E4NYJ3_BIFBP
ABC transporter
Uncharacterized protein {ECO:0000313|EMBL:ERI84113.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_047_000M1_scaffold_1140_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3876..4517
DNA (642bp) protein (214aa)
upp; uracil phosphoribosyl transferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Uracil phosphoribosyltransferase n=6 Tax=Bifidobacterium bifidum RepID=E3ELK4_BIFBS
L2_047_000M1_scaffold_1140_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4749..5228
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Ribosomal RNA large subunit methyltransferase H n=6 Tax=Bifidobacterium RepID=E4NYJ1_BIFBP
hypothetical protein
L2_047_000M1_scaffold_1140_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5245..8664)
DNA (3420bp) protein (1140aa)
Permease protein of ABC transporter system n=4 Tax=Bifidobacterium bifidum RepID=E4NYJ0_BIFBP
ABC transporter permease
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EFR49531.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_047_000M1_scaffold_1140_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8673..9374)
DNA (702bp) protein (234aa)
ATP-binding protein of ABC transporter system n=7 Tax=Bifidobacterium bifidum RepID=E3ELK1_BIFBS
ABC transporter ATP-binding protein
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:EKE49815.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_047_000M1_scaffold_1140_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9512..10081
DNA (570bp) protein (190aa)
Transcriptional regulator, TetR family n=6 Tax=Bifidobacterium bifidum RepID=E3ELK0_BIFBS
yxbF; putative HTH-type transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:BAQ97368.1}; Transcriptional regulator, TetR family {ECO:0000313|EMBL:ERI84118.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_047_000M1_scaffold_1140_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10646..10825
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7C1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49528.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_047_000M1_scaffold_1140_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10822..12318
DNA (1497bp) protein (499aa)
Aap Amino acid permease n=2 Tax=Bifidobacterium bifidum RepID=E4NYI7_BIFBP
aap; amino acid permease
Aromatic amino acid transport protein {ECO:0000313|EMBL:BAQ97367.1}; Putative aromatic amino acid transport protein AroP {ECO:0000313|EMBL:ERI84120.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_047_000M1_scaffold_1140_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12615..16493
DNA (3879bp) protein (1293aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Beta-galactosidase P1 n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELJ8_BIFBS
lacZ1; beta-galactosidase P1
L2_047_000M1_scaffold_1140_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16866..17855
DNA (990bp) protein (330aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WFS7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42265.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_047_000M1_scaffold_1140_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18292..18963)
DNA (672bp) protein (224aa)
ilvC; ketol-acid reductoisomerase/2-dehydropantoate 2-reductase IlvC (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Ketol-acid reductoisomerase n=2 Tax=Bifidobacterium bifidum RepID=E3ELJ6_BIFBS
L2_047_000M1_scaffold_1140_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18923..19312)
DNA (390bp) protein (130aa)
Ketol-acid reductoisomerase {ECO:0000313|EMBL:EKF14845.1}; EC=1.1.1.86 {ECO:0000313|EMBL:EKF14845.1};; Flags: Fragment;; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
ilvC; ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=4 Tax=Bifidobacterium RepID=E4V7B6_BIFBI
L2_047_000M1_scaffold_1140_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19731..20402)
DNA (672bp) protein (224aa)
ilvC; ketol-acid reductoisomerase/2-dehydropantoate 2-reductase ilvC (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Ketol-acid reductoisomerase n=7 Tax=Bifidobacterium bifidum RepID=E3ELJ5_BIFBS
L2_047_000M1_scaffold_1140_18
Bifidobacterium reuteri, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20362..20616)
DNA (255bp) protein (85aa)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=1437610 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium reuteri DSM 23975.;"
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AV64_BIFLN
L2_047_000M1_scaffold_1140_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20862..22232)
DNA (1371bp) protein (457aa)
Transporter, MFS superfamily n=2 Tax=Bifidobacterium bifidum RepID=E4NYI2_BIFBP
MFS superfamily transporter
Transporter, MFS superfamily {ECO:0000313|EMBL:KFI42262.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_047_000M1_scaffold_1140_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22822..24507)
DNA (1686bp) protein (562aa)
Transporter, major facilitator family protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DW51_BIFBI
ScrT Sucrose transporter {ECO:0000313|EMBL:KFI42261.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
putative transmembrane protein
L2_047_000M1_scaffold_1140_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24558..24989)
DNA (432bp) protein (144aa)
sucrose phosphorylase (EC:2.4.1.7)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7B2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49519.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_047_000M1_scaffold_1140_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25072..26118)
DNA (1047bp) protein (349aa)
ScrR Transcriptional regulator, LacI family n=3 Tax=Bifidobacterium bifidum RepID=E4NYH9_BIFBP
rbsR; ribose operon repressor
ScrR Transcriptional regulator, LacI family {ECO:0000313|EMBL:KFI42259.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_047_000M1_scaffold_1140_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26273..26641)
DNA (369bp) protein (123aa)
Putative fluoride ion transporter CrcB n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7B0_BIFBI
crcB2; camphor resistance protein CrcB
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_047_000M1_scaffold_1140_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26643..27587)
DNA (945bp) protein (315aa)
Putative fluoride ion transporter CrcB n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYH7_BIFBP
crcB; family protein CrcB
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_047_000M1_scaffold_1140_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27662..28948)
DNA (1287bp) protein (429aa)
purA; adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Adenylosuccinate synthetase n=2 Tax=Bifidobacterium bifidum RepID=E4NYH6_BIFBP
L2_047_000M1_scaffold_1140_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29238..30305)
DNA (1068bp) protein (356aa)
fba; fructose-bisphosphate aldolase (EC:4.1.2.13)
Fructose-bisphosphate aldolase, class II {ECO:0000313|EMBL:AFL03729.1}; EC=4.1.2.13 {ECO:0000313|EMBL:AFL03729.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Fba Fructose-bisphosphate aldolase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYH5_BIFBP
L2_047_000M1_scaffold_1140_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30444..31739
DNA (1296bp) protein (432aa)
Polysaccharide deacetylase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELI4_BIFBS
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ADO52379.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying 27 items

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