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L2_047_000M1_scaffold_1818

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_1818_1
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..826
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FR49_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94911.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
peptidase S51
L2_047_000M1_scaffold_1818_2
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1053..1265)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FR50_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94912.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L2_047_000M1_scaffold_1818_3
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1344..3755)
DNA (2412bp) protein (804aa)
Alpha-galactosidase (EC:3.2.1.22)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HZH9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30152.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L2_047_000M1_scaffold_1818_4
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3770..5182)
DNA (1413bp) protein (471aa)
Glycoside/pentoside/hexuronide transporter n=2 Tax=Roseburia RepID=R5HKQ1_9FIRM
Glycoside/pentoside/hexuronide transporter {ECO:0000313|EMBL:CCY30153.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
sugar (glycoside-Pentoside-Hexuronide) transporter
L2_047_000M1_scaffold_1818_5
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5215..6717)
DNA (1503bp) protein (501aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HPV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30154.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_047_000M1_scaffold_1818_6
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6741..9176)
DNA (2436bp) protein (812aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HK81_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30155.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
beta-galactosidase
L2_047_000M1_scaffold_1818_7
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9222..9779)
DNA (558bp) protein (186aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R5I074_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30156.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Transcriptional regulator
L2_047_000M1_scaffold_1818_8
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9837..9974)
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FR57_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG94919.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
L2_047_000M1_scaffold_1818_9
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10051..11307
DNA (1257bp) protein (419aa)
UPF0272 protein BN501_02056 n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HZI3_9FIRM
UPF0272 protein BN501_02056 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_047_000M1_scaffold_1818_10
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11396..12241)
DNA (846bp) protein (282aa)
Tyrosine recombinase XerC n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HKQ5_9FIRM
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
integrase family protein
L2_047_000M1_scaffold_1818_11
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12494..12985)
DNA (492bp) protein (164aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C0FR60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30159.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_047_000M1_scaffold_1818_12
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13019..13576)
DNA (558bp) protein (186aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
Hydrolase, NUDIX family n=2 Tax=Roseburia RepID=C0FR61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30160.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L2_047_000M1_scaffold_1818_13
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13706..15253)
DNA (1548bp) protein (516aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Ribonuclease Y n=2 Tax=Roseburia RepID=C0FR62_9FIRM
metal dependent phosphohydrolase
L2_047_000M1_scaffold_1818_14
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15478..16089)
DNA (612bp) protein (204aa)
Regulatory protein RecX n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FR63_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
hypothetical protein
L2_047_000M1_scaffold_1818_15
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16092..17066)
DNA (975bp) protein (325aa)
Protein RecA n=2 Tax=Roseburia RepID=C0FR64_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
protein RecA
L2_047_000M1_scaffold_1818_16
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17063..17164)
DNA (102bp) protein (34aa)
Protein RecA n=2 Tax=Roseburia RepID=C0FR64_9FIRM
recA suspected. See adjacent gene [L2_047_000M1_scaffold_1818_15].
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
protein RecA
L2_047_000M1_scaffold_1818_17
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17440..17760)
DNA (321bp) protein (107aa)
Thioredoxin n=2 Tax=Roseburia RepID=C0FR65_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
thioredoxin
L2_047_000M1_scaffold_1818_18
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18042..19631)
DNA (1590bp) protein (530aa)
Peptide chain release factor 3 n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HK89_9FIRM
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
peptide chain release factor 3
L2_047_000M1_scaffold_1818_19
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19807..20571)
DNA (765bp) protein (255aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C0FR67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30166.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_047_000M1_scaffold_1818_20
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20587..21168)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HZJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30167.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
L2_047_000M1_scaffold_1818_21
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21161..21721)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HKR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30168.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Stage III sporulation protein AF (Spore_III_AF).
L2_047_000M1_scaffold_1818_22
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21741..22892)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HPX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30169.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Stage III sporulation protein AE (spore_III_AE).
L2_047_000M1_scaffold_1818_23
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22889..23272)
DNA (384bp) protein (128aa)
Putative stage III sporulation protein AD n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FR71_9FIRM
Putative stage III sporulation protein AD {ECO:0000313|EMBL:EEG94933.1}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
stage III sporulation protein AD
L2_047_000M1_scaffold_1818_24
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23313..23507)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I085_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30171.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
stage III sporulation protein AC
L2_047_000M1_scaffold_1818_25
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23541..24059)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HZJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30172.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
Stage III sporulation protein AB (spore_III_AB).
L2_047_000M1_scaffold_1818_26
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24053..25015)
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HKR8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30173.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
stage III sporulation protein AA
L2_047_000M1_scaffold_1818_27
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25149..26936)
DNA (1788bp) protein (596aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FR76_9FIRM
L2_047_000M1_scaffold_1818_28
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27089..27442)
DNA (354bp) protein (118aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C0FR77_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30175.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
Displaying 28 items

View Taxonomy