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L2_047_000M1_scaffold_334

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_334_1
unknown

Not on your lists

1..177
DNA (177bp) protein (59aa)

This feature has no annotations

L2_047_000M1_scaffold_334_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

269..907
DNA (639bp) protein (213aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUW4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96883.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(959..2410)
DNA (1452bp) protein (484aa)
Site-specific recombinase XerD n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUW3_9FIRM
Site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:CBK96882.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2373..3767)
DNA (1395bp) protein (465aa)
Site-specific recombinase XerD n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUW2_9FIRM
Site-specific recombinase XerD
Site-specific recombinase XerD {ECO:0000313|EMBL:CBK96881.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3810..4250)
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MR83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR99739.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Sugar-specific transcriptional regulator TrmB.
L2_047_000M1_scaffold_334_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4247..4456)
DNA (210bp) protein (70aa)
DNA binding domain, excisionase family n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUW1_9FIRM
DNA binding domain, excisionase family
DNA binding domain, excisionase family {ECO:0000313|EMBL:CBK96880.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4817..5092)
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUW0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96879.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5079..5342)
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUV9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96878.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5406..7466)
DNA (2061bp) protein (687aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUV8_9FIRM
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase {ECO:0000313|EMBL:CBK96877.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L2_047_000M1_scaffold_334_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7501..7914)
DNA (414bp) protein (138aa)
T/G mismatch-specific endonuclease (EC:3.1.-.-)
T/G mismatch-specific endonuclease {ECO:0000313|EMBL:CBK96876.1}; EC=3.1.-.- {ECO:0000313|EMBL:CBK96876.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
T/G mismatch-specific endonuclease n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUV7_9FIRM
L2_047_000M1_scaffold_334_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7916..9193)
DNA (1278bp) protein (426aa)
DNA-methyltransferase (dcm) (EC:2.1.1.37)
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417, ECO:0000313|EMBL:CBK96875.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Cytosine-specific methyltransferase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUV6_9FIRM
L2_047_000M1_scaffold_334_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9216..11315)
DNA (2100bp) protein (700aa)
AIPR protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUV5_9FIRM
AIPR protein.
AIPR protein {ECO:0000313|EMBL:CBK96874.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11317..12231)
DNA (915bp) protein (305aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUV4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96873.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12232..15018)
DNA (2787bp) protein (929aa)
Z1 domain n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUV3_9FIRM
Z1 domain.
Z1 domain {ECO:0000313|EMBL:CBK96872.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15011..16534)
DNA (1524bp) protein (508aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUV1_9FIRM
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase {ECO:0000313|EMBL:CBK96870.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L2_047_000M1_scaffold_334_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16559..16771)
DNA (213bp) protein (71aa)
Predicted transcriptional regulator n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUV0_9FIRM
Predicted transcriptional regulator
Predicted transcriptional regulator {ECO:0000313|EMBL:CBK96869.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17594..17818)
DNA (225bp) protein (75aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUU9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96868.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18064..19581)
DNA (1518bp) protein (506aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CBK96867.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
hypothetical protein
L2_047_000M1_scaffold_334_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19676..21430)
DNA (1755bp) protein (585aa)
Endoglucanase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUU7_9FIRM
Endoglucanase {ECO:0000313|EMBL:CBK96866.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Endoglucanase
L2_047_000M1_scaffold_334_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21463..23574)
DNA (2112bp) protein (704aa)
Glycosyl hydrolases family 43./Carbohydrate binding module (Family 6) n=3 Tax=root RepID=D4JUU6_9FIRM
Glycosyl hydrolases family 43./Carbohydrate binding module (Family 6) {ECO:0000313|EMBL:CBK96865.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Glycosyl hydrolases family 43./Carbohydrate binding module (family 6).
L2_047_000M1_scaffold_334_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23586..24980)
DNA (1395bp) protein (465aa)
Beta-xylosidase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUU5_9FIRM
Beta-xylosidase
Beta-xylosidase {ECO:0000313|EMBL:CBK96864.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25242..27368
DNA (2127bp) protein (709aa)
Transcriptional regulators n=2 Tax=root RepID=D4JUU3_9FIRM
Transcriptional regulators {ECO:0000313|EMBL:CBK96862.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Transcriptional regulators
L2_047_000M1_scaffold_334_23
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28010..31156)
DNA (3147bp) protein (1049aa)
DNA or RNA helicases of superfamily II n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUU1_9FIRM
DNA or RNA helicases of superfamily II {ECO:0000313|EMBL:CBK96860.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
DNA or RNA helicases of superfamily II
L2_047_000M1_scaffold_334_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31518..32186)
DNA (669bp) protein (223aa)
ABC-type antimicrobial peptide transport system, ATPase component n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUU0_9FIRM
ABC-type antimicrobial peptide transport system, ATPase component
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:CBK96859.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32187..33311)
DNA (1125bp) protein (375aa)
Predicted permease n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUT9_9FIRM
Predicted permease.
Predicted permease {ECO:0000313|EMBL:CBK96858.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_26
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33308..34288)
DNA (981bp) protein (327aa)
Predicted permease n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUT8_9FIRM
Predicted permease.
Predicted permease {ECO:0000313|EMBL:CBK96857.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_27
unknown

Not on your lists

comp(34392..34850)
DNA (459bp) protein (153aa)

This feature has no annotations

L2_047_000M1_scaffold_334_28
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34950..35084)
DNA (135bp) protein (45aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUT7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK96856.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_29
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35081..35671)
DNA (591bp) protein (197aa)
Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUT6_9FIRM
Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide
Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide {ECO:0000313|EMBL:CBK96855.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_334_30
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35838..37151)
DNA (1314bp) protein (438aa)
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JUT5_9FIRM
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase {ECO:0000313|EMBL:CBK96854.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Displaying items 1-30 of 57 in total

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