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L2_047_000M1_scaffold_772

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_772_1
unknown

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comp(2..61)
DNA (60bp) protein (20aa)

This feature has no annotations

L2_047_000M1_scaffold_772_2
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(341..1714)
DNA (1374bp) protein (458aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
tRNA modification GTPase MnmE n=2 Tax=Eubacterium RepID=D4MIV2_9FIRM
tRNA modification GTPase TrmE
L2_047_000M1_scaffold_772_3
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1721..4051)
DNA (2331bp) protein (777aa)
Protein translocase subunit SecA n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6RV65_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Preprotein translocase subunit SecA (ATPase, RNA helicase)
L2_047_000M1_scaffold_772_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4485..5867
DNA (1383bp) protein (461aa)
UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase (EC:2.3.1.157 2.7.7.23)
Bifunctional protein GlmU n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMU7_9FIRM
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L2_047_000M1_scaffold_772_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5880..6980
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01011.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
alpha/beta hydrolase fold protein
L2_047_000M1_scaffold_772_6
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7024..10593
DNA (3570bp) protein (1190aa)
Fibronectin type III domain n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWK7_9FIRM
Fibronectin type III domain.
Fibronectin type III domain {ECO:0000313|EMBL:CBK97476.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_772_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11183..14425
DNA (3243bp) protein (1081aa)
Endo-beta-mannanase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWK8_9FIRM
Endo-beta-mannanase
Endo-beta-mannanase {ECO:0000313|EMBL:CBK97477.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_772_8
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14695..14898)
DNA (204bp) protein (68aa)
Uncharacterized protein n=5 Tax=root RepID=B0MMM4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC46899.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_772_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14898..16088)
DNA (1191bp) protein (397aa)
Alpha-galactosidase (EC:3.2.1.22)
Alpha-galactosidase {ECO:0000256|RuleBase:RU361168, ECO:0000313|EMBL:CBL33680.1}; EC=3.2.1.22 {ECO:0000256|RuleBase:RU361168, ECO:0000313|EMBL:CBL33680.1};; Melibiase {ECO:0000256|RuleBase:RU361168}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
Alpha-galactosidase n=3 Tax=root RepID=D4MIU7_9FIRM
L2_047_000M1_scaffold_772_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16109..16342)
DNA (234bp) protein (78aa)
Uncharacterized protein conserved in bacteria n=5 Tax=root RepID=D4JWL1_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL33679.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_772_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16568..17341)
DNA (774bp) protein (258aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MIU5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33678.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_772_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17391..18098)
DNA (708bp) protein (236aa)
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Uracil-DNA glycosylase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWL3_9FIRM
L2_047_000M1_scaffold_772_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18076..18870)
DNA (795bp) protein (265aa)
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase (EC:3.2.2.- 4.2.99.18)
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase {ECO:0000313|EMBL:CBK97483.1}; EC=3.2.2.- {ECO:0000313|EMBL:CBK97483.1};; EC=4.2.99.18 {ECO:0000313|EMBL:CBK97483.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWL4_9FIRM
L2_047_000M1_scaffold_772_14
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19076..19780
DNA (705bp) protein (235aa)
Uncharacterized protein n=2 Tax=root RepID=R6RV32_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC46881.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
hypothetical protein
L2_047_000M1_scaffold_772_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19921..20607
DNA (687bp) protein (229aa)
Putative uncharacterized protein n=2 Tax=root RepID=D4JWL5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97484.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_772_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20611..20919
DNA (309bp) protein (103aa)
Uncharacterized protein n=5 Tax=root RepID=B0MMN2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33674.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_772_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20922..21323
DNA (402bp) protein (134aa)
ATP synthase I chain n=2 Tax=root RepID=D4JWL7_9FIRM
ATP synthase I chain.
ATP synthase I chain {ECO:0000313|EMBL:CBK97486.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_772_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21424..22152
DNA (729bp) protein (243aa)
F0F1-type ATP synthase, subunit a (EC:3.6.3.14)
ATP synthase subunit a n=2 Tax=Eubacterium siraeum RepID=D4MIT9_9FIRM
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_772_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22478..22759
DNA (282bp) protein (94aa)
ATP synthase F0 subcomplex C subunit (EC:3.6.3.14)
ATP synthase F0 subcomplex C subunit {ECO:0000313|EMBL:CBK97488.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CBK97488.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
ATP synthase F0 subcomplex C subunit n=3 Tax=Eubacterium RepID=D4JWL9_9FIRM
L2_047_000M1_scaffold_772_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22797..23339
DNA (543bp) protein (181aa)
ATP synthase, F0 subunit b (EC:3.6.3.14)
ATP synthase subunit b n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWM0_9FIRM
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398, ECO:0000256|RuleBase:RU003849}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_772_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23341..23886
DNA (546bp) protein (182aa)
ATP synthase, F1 delta subunit (EC:3.6.3.14)
ATP synthase subunit delta n=3 Tax=root RepID=D4JWM1_9FIRM
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_772_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23934..25439
DNA (1506bp) protein (502aa)
ATP synthase F1 subcomplex alpha subunit (EC:3.6.3.14)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346, ECO:0000313|EMBL:CBK97491.1};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
ATP synthase subunit alpha n=2 Tax=root RepID=D4JWM2_9FIRM
L2_047_000M1_scaffold_772_23
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25478..25603
DNA (126bp) protein (42aa)
Uncharacterized protein n=3 Tax=Eubacterium RepID=R6RG92_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC46840.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_772_24
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25673..26476
DNA (804bp) protein (268aa)
ATP synthase F1 subcomplex gamma subunit (EC:3.6.3.14)
ATP synthase gamma chain n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6SJQ4_9FIRM
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_772_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26499..27896
DNA (1398bp) protein (466aa)
ATP synthase F1 subcomplex beta subunit (EC:3.6.3.14)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347, ECO:0000313|EMBL:CBL33665.1};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
ATP synthase subunit beta n=4 Tax=root RepID=D4MIT2_9FIRM
L2_047_000M1_scaffold_772_26
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27928..28470
DNA (543bp) protein (181aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWM6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97495.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_772_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28495..28902
DNA (408bp) protein (136aa)
ATP synthase, F1 epsilon subunit (delta in mitochondria) (EC:3.6.3.14)
ATP synthase epsilon chain n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWM7_9FIRM
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_772_28
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29051..29488)
DNA (438bp) protein (146aa)
Transcriptional regulator, BadM/Rrf2 family n=5 Tax=root RepID=D4JWM8_9FIRM
transcriptional regulator, BadM/Rrf2 family
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:CBK97497.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_772_29
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29863..31536
DNA (1674bp) protein (558aa)
FOG: EAL domain n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWM9_9FIRM
FOG: EAL domain
FOG: EAL domain {ECO:0000313|EMBL:CBK97498.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Displaying 29 items

View Taxonomy