ggKbase home page

L2_047_000M1_scaffold_1143

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_1143_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(221..526)
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS66_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95935.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1143_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(726..986)
DNA (261bp) protein (87aa)
Uncharacterized protein n=3 Tax=Eubacterium siraeum RepID=B0MRX3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34287.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_1143_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1114..1977
DNA (864bp) protein (288aa)
Pyridoxal/pyridoxine/pyridoxamine kinase (EC:2.7.1.35)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591, ECO:0000313|EMBL:CBK95933.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Pyridoxal/pyridoxine/pyridoxamine kinase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS64_9FIRM
L2_047_000M1_scaffold_1143_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3294..3767
DNA (474bp) protein (158aa)
Uncharacterized conserved protein n=2 Tax=Eubacterium siraeum RepID=D4JS62_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL34283.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_1143_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3840..6812)
DNA (2973bp) protein (991aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS61_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95930.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1143_6

Not on your lists

comp(7384..8040)
DNA (657bp) protein (219aa)
Competence protein F-related protein n=1 Tax=human gut metagenome RepID=K1UGF2_9ZZZZ
Competence protein F-related protein {ECO:0000313|EMBL:EKC81223.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Predicted amidophosphoribosyltransferases
L2_047_000M1_scaffold_1143_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8027..10222)
DNA (2196bp) protein (732aa)
Putative uncharacterized protein n=2 Tax=root RepID=D4JS59_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CBK95928.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
hypothetical protein
L2_047_000M1_scaffold_1143_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10249..11010)
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=2 Tax=root RepID=D4JS58_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95927.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1143_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10979..11140)
DNA (162bp) protein (54aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS57_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95926.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1143_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11192..12235)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=Eubacterium siraeum RepID=UPI0002E35504
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EDR99500.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
transcriptional regulator
L2_047_000M1_scaffold_1143_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12346..12459
DNA (114bp) protein (38aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS56_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95925.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1143_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12452..14014
DNA (1563bp) protein (521aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS55_9FIRM
Site-specific recombinases, DNA invertase Pin homologs {ECO:0000313|EMBL:CBK95924.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Site-specific recombinases, DNA invertase Pin homologs
L2_047_000M1_scaffold_1143_13
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14011..14358
DNA (348bp) protein (116aa)
Mn-containing catalase n=4 Tax=Eubacterium RepID=D4JS54_9FIRM
Mn-containing catalase
Mn-containing catalase {ECO:0000313|EMBL:CDC44479.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_1143_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14738..15202)
DNA (465bp) protein (155aa)
SsrA-binding protein n=3 Tax=Eubacterium RepID=D4JS53_9FIRM
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L2_047_000M1_scaffold_1143_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15396..15620
DNA (225bp) protein (75aa)
Uncharacterized protein n=3 Tax=Eubacterium RepID=R6RII3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL34268.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_1143_16
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15647..16999
DNA (1353bp) protein (451aa)
glutamate dehydrogenase (NADP) (EC:1.4.1.4)
Glutamate dehydrogenase n=2 Tax=Eubacterium RepID=D4JS51_9FIRM
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_1143_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17044..17208
DNA (165bp) protein (55aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS50_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95919.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1143_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17521..20175)
DNA (2655bp) protein (885aa)
Beta-galactosidase/beta-glucuronidase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS49_9FIRM
Beta-galactosidase/beta-glucuronidase
Beta-galactosidase/beta-glucuronidase {ECO:0000313|EMBL:CBK95918.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1143_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20423..22030)
DNA (1608bp) protein (536aa)
Bacterial group 2 Ig-like protein n=2 Tax=root RepID=B0MRS3_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:EDR99491.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Bacterial surface proteins containing Ig-like domains
L2_047_000M1_scaffold_1143_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22321..23406
DNA (1086bp) protein (362aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897, ECO:0000313|EMBL:CBK95916.1}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897, ECO:0000313|EMBL:CBK95916.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS47_9FIRM
L2_047_000M1_scaffold_1143_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23476..24078
DNA (603bp) protein (201aa)
1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897, ECO:0000313|EMBL:CBK95916.1}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897, ECO:0000313|EMBL:CBK95916.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS47_9FIRM
L2_047_000M1_scaffold_1143_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24132..25265)
DNA (1134bp) protein (378aa)
Putative cysteine desulfurase family protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRS1_9FIRM
Selenocysteine lyase
Putative cysteine desulfurase family protein {ECO:0000313|EMBL:EDR99489.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L2_047_000M1_scaffold_1143_23
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25262..25477)
DNA (216bp) protein (72aa)
Uncharacterized protein n=4 Tax=Eubacterium RepID=B0MRS0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC43625.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_1143_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26192..28327
DNA (2136bp) protein (712aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS44_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95913.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1143_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28357..30369
DNA (2013bp) protein (671aa)
DHHA1 domain protein n=3 Tax=root RepID=B0MRR6_9FIRM
DHHA1 domain protein {ECO:0000313|EMBL:EDR99484.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L2_047_000M1_scaffold_1143_26
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


30387..30833
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=4 Tax=root RepID=D4JS43_9FIRM
LSU ribosomal protein L9P
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_1143_27
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30833..32185
DNA (1353bp) protein (451aa)
primary replicative DNA helicase (EC:3.6.1.-)
Primary replicative DNA helicase {ECO:0000313|EMBL:CBK95911.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBK95911.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Primary replicative DNA helicase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS42_9FIRM
L2_047_000M1_scaffold_1143_28
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32226..33146
DNA (921bp) protein (307aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
tRNA(Ile)-lysidine synthase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS41_9FIRM
tRNA(Ile)-lysidine synthetase, N-terminal domain
L2_047_000M1_scaffold_1143_29
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33300..33839
DNA (540bp) protein (180aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EDR99480.1}; EC=2.4.2.8 {ECO:0000313|EMBL:EDR99480.1};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Hypoxanthine phosphoribosyltransferase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRR2_9FIRM
hprT; Hypoxanthine-guanine phosphoribosyltransferase
L2_047_000M1_scaffold_1143_30
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33884..35869
DNA (1986bp) protein (662aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
membrane protease FtsH catalytic subunit (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=2 Tax=Eubacterium RepID=B0MRR1_9FIRM
Displaying 30 items

View Taxonomy