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L2_047_000M1_scaffold_1163

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_1163_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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453..6263
DNA (5811bp) protein (1937aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVC5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CBK97044.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Protein of unknown function (DUF3320).
L2_047_000M1_scaffold_1163_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6538..8079)
DNA (1542bp) protein (514aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVC4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97043.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1163_3
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8597..8869)
DNA (273bp) protein (91aa)
Uncharacterized protein n=3 Tax=Eubacterium RepID=B0MKK9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC49598.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_1163_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8936..9664)
DNA (729bp) protein (243aa)
Putative RNA polymerase sigma-H factor n=2 Tax=Eubacterium RepID=B0MKL0_9FIRM
Putative RNA polymerase sigma-H factor {ECO:0000313|EMBL:EDS01769.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
sigH; RNA polymerase sigma-30 factor (sigma(H))
L2_047_000M1_scaffold_1163_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9933..10679)
DNA (747bp) protein (249aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=B0MKI9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01771.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Uncharacterized membrane protein, possible Na+ channel or pump
L2_047_000M1_scaffold_1163_6
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10932..11774
DNA (843bp) protein (281aa)
Transketolase, N-terminal subunit (EC:2.2.1.1)
Transketolase N-terminal subunit n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6S2R7_9FIRM
Transketolase N-terminal subunit {ECO:0000313|EMBL:CDC49601.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_1163_7
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11796..12731
DNA (936bp) protein (312aa)
Transketolase, C-terminal subunit (EC:2.2.1.1)
Transketolase, C-terminal subunit n=2 Tax=Eubacterium RepID=D4JVB8_9FIRM
Transketolase C-terminal subunit {ECO:0000313|EMBL:CDC49602.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_1163_8
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13067..13993
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MI00_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33383.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_1163_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14018..14569
DNA (552bp) protein (184aa)
Fructose-2,6-bisphosphatase (EC:5.4.2.1)
Phosphoglycerate mutase family protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKJ5_9FIRM
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EDS01777.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L2_047_000M1_scaffold_1163_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14545..14784
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MHZ8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33381.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_1163_11
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14777..15406
DNA (630bp) protein (210aa)
ADP-ribose pyrophosphatase n=4 Tax=Eubacterium RepID=D4JVB4_9FIRM
ADP-ribose pyrophosphatase
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:CDC49608.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_1163_12
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15482..15709
DNA (228bp) protein (76aa)
FeoA domain protein n=4 Tax=root RepID=B0MKJ8_9FIRM
FeoA domain protein {ECO:0000313|EMBL:CDC49609.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_1163_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15919..17196
DNA (1278bp) protein (426aa)
dihydroorotase, multifunctional complex type (EC:3.5.2.3)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000313|EMBL:CBK97032.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Dihydroorotase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVB3_9FIRM
L2_047_000M1_scaffold_1163_14
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17239..18171
DNA (933bp) protein (311aa)
orotidine 5'-phosphate decarboxylase, subfamily 2 (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Orotidine 5'-phosphate decarboxylase n=5 Tax=root RepID=D4JVB2_9FIRM
L2_047_000M1_scaffold_1163_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18214..19332
DNA (1119bp) protein (373aa)
carbamoyl-phosphate synthase small subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Carbamoyl-phosphate synthase small chain n=4 Tax=root RepID=D4JVB1_9FIRM
L2_047_000M1_scaffold_1163_16
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19323..22529
DNA (3207bp) protein (1069aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=4 Tax=root RepID=B0MKK2_9FIRM
L2_047_000M1_scaffold_1163_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22542..23156
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01785.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
L2_047_000M1_scaffold_1163_18
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23245..24018
DNA (774bp) protein (258aa)
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVA9_9FIRM
2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases
Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; Dihydroorotate oxidase B, electron transfer subunit {ECO:0000256|HAMAP-Rule:MF_01211}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1163_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24015..24935
DNA (921bp) protein (307aa)
dihydroorotate oxidase B, catalytic subunit (EC:1.3.98.1)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Dihydroorotate dehydrogenase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVA8_9FIRM
L2_047_000M1_scaffold_1163_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25464..27632)
DNA (2169bp) protein (723aa)
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVA7_9FIRM
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain {ECO:0000313|EMBL:CBK97026.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
L2_047_000M1_scaffold_1163_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27629..28240)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MKH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS01791.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
L2_047_000M1_scaffold_1163_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28485..29708
DNA (1224bp) protein (408aa)
ATPase n=1 Tax=Eubacterium siraeum RepID=UPI00030BE25D
Uncharacterized protein {ECO:0000313|EMBL:EDS01793.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
Predicted ATPase (AAA+ superfamily)
L2_047_000M1_scaffold_1163_23
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29769..30095)
DNA (327bp) protein (109aa)
Predicted transcriptional regulators n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVA6_9FIRM
Predicted transcriptional regulators
Predicted transcriptional regulators {ECO:0000313|EMBL:CBK97025.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1163_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30202..30435
DNA (234bp) protein (78aa)
Helix-turn-helix, Psq domain n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVA5_9FIRM
helix-turn-helix, Psq domain.
Helix-turn-helix, Psq domain {ECO:0000313|EMBL:CBK97024.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1163_25
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30441..31637
DNA (1197bp) protein (399aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JVA4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97023.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1163_26
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31778..33532)
DNA (1755bp) protein (585aa)
TnpX site-specific recombinase family protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QQK2_9FIRM
TnpX site-specific recombinase family protein {ECO:0000313|EMBL:ERK43593.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L2_047_000M1_scaffold_1163_27
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33529..33852)
DNA (324bp) protein (108aa)
Resolvase protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PIL9_9FIRM
Resolvase protein {ECO:0000313|EMBL:ERK43594.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
Site-specific recombinases, DNA invertase Pin homologs
L2_047_000M1_scaffold_1163_28
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33946..34119)
DNA (174bp) protein (58aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2CA36_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERK43595.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
Displaying 28 items

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