ggKbase home page

L2_047_000M1_scaffold_1415

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_1415_1
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(313..1686)
DNA (1374bp) protein (458aa)
Transporter n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWK4_9FIRM
Na+-dependent transporters of the SNF family
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_2
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1901..2479)
DNA (579bp) protein (193aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CBL33687.1}; EC=2.7.8.5 {ECO:0000313|EMBL:CBL33687.1};; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWK3_9FIRM
L2_047_000M1_scaffold_1415_3
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2498..3838)
DNA (1341bp) protein (447aa)
SSU ribosomal protein S12P methylthiotransferase (EC:1.3.1.74 2.-.-.-)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Ribosomal protein S12 methylthiotransferase RimO n=3 Tax=root RepID=D4JWK2_9FIRM
L2_047_000M1_scaffold_1415_4
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3886..4392)
DNA (507bp) protein (169aa)
Regulatory protein RecX n=2 Tax=root RepID=D4JWK1_9FIRM
hypothetical protein
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_5
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(4392..5651)
DNA (1260bp) protein (420aa)
Protein RecA n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWK0_9FIRM
protein RecA
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_6
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5743..6534)
DNA (792bp) protein (264aa)
Protein-(Glutamine-N5) methyltransferase release factor-specific n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6REU3_9FIRM
Protein-(Glutamine-N5) methyltransferase release factor-specific {ECO:0000313|EMBL:CDC43844.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
protein-(glutamine-N5) methyltransferase, release factor-specific
L2_047_000M1_scaffold_1415_7
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6564..7619)
DNA (1056bp) protein (352aa)
Predicted metal-dependent enzyme n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWJ9_9FIRM
Predicted metal-dependent enzyme
Predicted metal-dependent enzyme {ECO:0000313|EMBL:CBK97468.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_8
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7639..9012)
DNA (1374bp) protein (458aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
Two-component system sensor histidine kinase (EC:2.7.3.-)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Eubacterium siraeum CAG:80 RepID=R6REU8_9FIRM
L2_047_000M1_scaffold_1415_9
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9087..9821)
DNA (735bp) protein (245aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWJ8_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBK97467.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_10
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9879..11291)
DNA (1413bp) protein (471aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWJ7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97466.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_11
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11374..12336)
DNA (963bp) protein (321aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWJ6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97465.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_12
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12369..13709)
DNA (1341bp) protein (447aa)
Citrate synthase (EC:2.3.3.1 2.3.3.5)
Citrate synthase n=4 Tax=root RepID=D4JWJ5_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000313|EMBL:CBK97464.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_13
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13873..14769
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWJ4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97463.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_14
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15865..17262)
DNA (1398bp) protein (466aa)
Putative efflux protein, MATE family n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWJ3_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBK97462.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_15
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17281..18363)
DNA (1083bp) protein (361aa)
ADP-ribosylglycohydrolase n=2 Tax=root RepID=D4JWJ2_9FIRM
ADP-ribosylglycohydrolase
ADP-ribosylglycohydrolase {ECO:0000313|EMBL:CBK97461.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_16
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18687..19817)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MMS6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDS00987.1}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
hypothetical protein
L2_047_000M1_scaffold_1415_17
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19829..20803)
DNA (975bp) protein (325aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum V10Sc8a RepID=D4MIX0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL33703.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L2_047_000M1_scaffold_1415_18
Eubacterium siraeum CAG:80, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20818..21222)
DNA (405bp) protein (135aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=R6SSH7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC49532.1}; TaxID=1263080 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium siraeum CAG:80.;"
L2_047_000M1_scaffold_1415_19
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21263..23563)
DNA (2301bp) protein (767aa)
Alpha-galactosidase (EC:3.2.1.22)
Alpha-galactosidase {ECO:0000313|EMBL:CBK97458.1}; EC=3.2.1.22 {ECO:0000313|EMBL:CBK97458.1};; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
Alpha-galactosidase n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWI9_9FIRM
L2_047_000M1_scaffold_1415_20
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23879..24754
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWI8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97457.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_21
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25256..26662
DNA (1407bp) protein (469aa)
Predicted permease n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWI6_9FIRM
Predicted permease
Predicted permease {ECO:0000313|EMBL:CBK97455.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_22
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27053..28579
DNA (1527bp) protein (509aa)
YjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWI5_9FIRM
yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region
YjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region {ECO:0000313|EMBL:CBK97454.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_23
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28623..29168
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JWI4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97453.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L2_047_000M1_scaffold_1415_24
unknown

Not on your lists

comp(28978..29472)
DNA (495bp) protein (165aa)

This feature has no annotations

Displaying 24 items

View Taxonomy