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L2_047_000M1_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 303 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_4_1
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(437..1156)
DNA (720bp) protein (240aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Clostridium sp. CAG:127 RepID=R5NTV1_9CLOT
L2_047_000M1_scaffold_4_2
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1156..2175)
DNA (1020bp) protein (340aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Clostridium sp. CAG:127 RepID=R5NP46_9CLOT
L2_047_000M1_scaffold_4_3
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2269..2877)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5P996_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ05567.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
L2_047_000M1_scaffold_4_4
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2884..3795)
DNA (912bp) protein (304aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
RNAse Z (EC:3.1.26.11)
Ribonuclease Z n=1 Tax=Clostridium sp. CAG:127 RepID=R5P725_9CLOT
L2_047_000M1_scaffold_4_5
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3797..4312)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NN35_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ05565.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
ribosomal-protein-alanine acetyltransferase
L2_047_000M1_scaffold_4_6
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4316..5032)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NTU8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ05564.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
Inactive homolog of metal-dependent proteases, putative molecular chaperone
L2_047_000M1_scaffold_4_7
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5029..5472)
DNA (444bp) protein (148aa)
Conserved hypothetical nucleotide-binding protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NP42_9CLOT
Conserved hypothetical nucleotide-binding protein {ECO:0000313|EMBL:CCZ05563.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
conserved hypothetical nucleotide-binding protein
L2_047_000M1_scaffold_4_8
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5456..5995)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5P992_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ05562.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
hypothetical protein
L2_047_000M1_scaffold_4_9
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6016..6498)
DNA (483bp) protein (161aa)
Deoxycytidylate deaminase (EC:3.5.4.12)
Cytidine and deoxycytidylate deaminase zinc-binding protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5P721_9CLOT
Cytidine and deoxycytidylate deaminase zinc-binding protein {ECO:0000313|EMBL:CCZ05561.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
L2_047_000M1_scaffold_4_10
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6597..7808)
DNA (1212bp) protein (404aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Clostridium sp. CAG:127 RepID=R5NTU7_9CLOT
L2_047_000M1_scaffold_4_11
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7805..8290)
DNA (486bp) protein (162aa)
CheW protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NP39_9CLOT
CheW protein {ECO:0000313|EMBL:CCZ05558.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
chemotaxis protein CheW
L2_047_000M1_scaffold_4_12
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8320..9321)
DNA (1002bp) protein (334aa)
Peptide chain release factor 2 n=1 Tax=Clostridium sp. CAG:127 RepID=R5P988_9CLOT
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
bacterial peptide chain release factor 2 (bRF-2)
L2_047_000M1_scaffold_4_13
Clostridium sp. CAG:632, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9470..12043)
DNA (2574bp) protein (858aa)
Protein translocase subunit SecA n=1 Tax=Clostridium sp. CAG:632 RepID=R5KDF6_9CLOT
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1262830 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:632.;"
protein translocase subunit secA
L2_047_000M1_scaffold_4_14
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12238..12765)
DNA (528bp) protein (176aa)
Ribosomal subunit interface protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NN31_9CLOT
Ribosomal subunit interface protein {ECO:0000313|EMBL:CCZ05555.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
SSU ribosomal protein S30P/sigma 54 modulation protein
L2_047_000M1_scaffold_4_15
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12987..14306)
DNA (1320bp) protein (440aa)
NlpC/P60 family protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NTU6_9CLOT
NlpC/P60 family protein {ECO:0000313|EMBL:CCZ05554.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
Cell wall-associated hydrolases (invasion-associated proteins)
L2_047_000M1_scaffold_4_16
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14679..16004)
DNA (1326bp) protein (442aa)
Sigma-70 region 2 n=1 Tax=Clostridium sp. CAG:127 RepID=R5P986_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:CCZ05552.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
serine/threonine protein kinase
L2_047_000M1_scaffold_4_17
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16101..17276)
DNA (1176bp) protein (392aa)
Transporter major facilitator family protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NN27_9CLOT
Transporter major facilitator family protein {ECO:0000313|EMBL:CCZ05550.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
Arabinose efflux permease
L2_047_000M1_scaffold_4_18
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17437..17628)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NTU5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ05549.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
hypothetical protein
L2_047_000M1_scaffold_4_19
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17834..18547
DNA (714bp) protein (238aa)
Response regulator of the LytR/AlgR family n=1 Tax=Clostridium sp. CAG:127 RepID=R5NP32_9CLOT
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CCZ05548.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
Response regulator of the LytR/AlgR family
L2_047_000M1_scaffold_4_20
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18583..19425)
DNA (843bp) protein (281aa)
Accessory gene regulator B n=1 Tax=Clostridium sp. CAG:127 RepID=R5P982_9CLOT
Accessory gene regulator B {ECO:0000313|EMBL:CCZ05547.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
AgrB-like protein
L2_047_000M1_scaffold_4_21
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19526..19672)
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5P713_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ05546.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
L2_047_000M1_scaffold_4_22
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19915..21189
DNA (1275bp) protein (425aa)
Histidine kinase-DNA gyrase B-and HSP90-like ATPase n=1 Tax=Clostridium sp. CAG:127 RepID=R5NN25_9CLOT
Histidine kinase-DNA gyrase B-and HSP90-like ATPase {ECO:0000313|EMBL:CCZ05545.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L2_047_000M1_scaffold_4_23
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21184..21861)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NTU4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ05544.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
cell wall hydrolase/autolysin
L2_047_000M1_scaffold_4_24
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21919..23721)
DNA (1803bp) protein (601aa)
aspartyl-tRNA synthetase (EC:6.1.1.12)
Aspartate--tRNA ligase n=1 Tax=Clostridium sp. CAG:127 RepID=R5NP28_9CLOT
Aspartate--tRNA ligase 1 {ECO:0000313|EMBL:CCZ05543.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
L2_047_000M1_scaffold_4_25
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(23836..25098)
DNA (1263bp) protein (421aa)
histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Clostridium sp. CAG:127 RepID=R5P980_9CLOT
Histidine--tRNA ligase {ECO:0000313|EMBL:CCZ05542.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
L2_047_000M1_scaffold_4_26
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25135..26745)
DNA (1611bp) protein (537aa)
Coproporphyrinogen III oxidase and related Fe-S oxidoreductases (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase HemZ n=1 Tax=Clostridium sp. CAG:127 RepID=R5P710_9CLOT
Coproporphyrinogen dehydrogenase HemZ {ECO:0000313|EMBL:CCZ05541.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
L2_047_000M1_scaffold_4_27
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26747..27379)
DNA (633bp) protein (211aa)
Metallo-beta-lactamase domain protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NN21_9CLOT
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:CCZ05540.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
Zn-dependent hydrolases, including glyoxylases
L2_047_000M1_scaffold_4_28
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27426..29702)
DNA (2277bp) protein (759aa)
(p)ppGpp synthetase, RelA/SpoT family (EC:2.7.6.5)
RelA/SpoT family protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NTU3_9CLOT
RelA/SpoT family protein {ECO:0000313|EMBL:CCZ05539.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
L2_047_000M1_scaffold_4_29
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29708..30232)
DNA (525bp) protein (175aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
adenine phosphoribosyltransferase (EC:2.4.2.7)
Adenine phosphoribosyltransferase n=1 Tax=Clostridium sp. CAG:127 RepID=R5NP24_9CLOT
L2_047_000M1_scaffold_4_30
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30261..32108)
DNA (1848bp) protein (616aa)
exonuclease RecJ (EC:3.1.-.-)
Exonuclease RecJ n=1 Tax=Clostridium sp. CAG:127 RepID=R5P976_9CLOT
Exonuclease RecJ {ECO:0000313|EMBL:CCZ05537.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
Displaying items 1-30 of 303 in total

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