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L2_047_000M1_scaffold_1062

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_1062_1
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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comp(1..315)
DNA (315bp) protein (105aa)
Putative endoribonuclease L-PSP n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6CZZ6_9FIRM
Putative endoribonuclease L-PSP {ECO:0000313|EMBL:CDA81080.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
endoribonuclease L-PSP
L2_047_000M1_scaffold_1062_2
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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418..1182
DNA (765bp) protein (255aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D1H9_9FIRM
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDA81635.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
putative ABC transporter ATP-binding protein
L2_047_000M1_scaffold_1062_3
unknown

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comp(1250..1399)
DNA (150bp) protein (50aa)

This feature has no annotations

L2_047_000M1_scaffold_1062_4
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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1506..1976
DNA (471bp) protein (157aa)
Putative ABC transporter permease protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GM00_9FIRM
Putative ABC transporter permease protein {ECO:0000313|EMBL:CDB26473.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
putative ABC transporter permease protein
L2_047_000M1_scaffold_1062_5
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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1973..2977
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6CYS1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81633.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
hypothetical protein
L2_047_000M1_scaffold_1062_6
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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3237..3356
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D0H4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81280.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
L2_047_000M1_scaffold_1062_7
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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3391..4941
DNA (1551bp) protein (517aa)
Putative site-specific recombinase n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KZG9_OSCVS
putative site-specific recombinase
Putative site-specific recombinase {ECO:0000313|EMBL:BAK98802.1}; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
L2_047_000M1_scaffold_1062_8
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5040..5777)
DNA (738bp) protein (246aa)
Uncharacterized protein n=2 Tax=Oscillibacter RepID=U2QMW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK63876.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
hypothetical protein
L2_047_000M1_scaffold_1062_9
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5789..7189)
DNA (1401bp) protein (467aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
acoL; acetoin dehydrogenase E3 component (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9M9D6_9FIRM
L2_047_000M1_scaffold_1062_10
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7203..8438)
DNA (1236bp) protein (412aa)
acoC2; TPP-dependent acetoin dehydrogenase complex E2 component dihydrolipoamide acetyltransferase AcoC2 (EC:2.3.1.12)
Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9MA08_9FIRM
Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase {ECO:0000313|EMBL:EOS67673.1}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
L2_047_000M1_scaffold_1062_11
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8449..9429)
DNA (981bp) protein (327aa)
acoB; acetoin dehydrogenase E1 component beta subunit (EC:1.1.1.-)
Acetoin dehydrogenase E1 component beta subunit {ECO:0000313|EMBL:BAK99327.1}; EC=1.1.1.- {ECO:0000313|EMBL:BAK99327.1};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Acetoin dehydrogenase E1 component beta subunit n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KP14_OSCVS
L2_047_000M1_scaffold_1062_12
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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comp(9426..9659)
DNA (234bp) protein (78aa)
acoA; acetoin dehydrogenase E1 component alpha subunit (EC:1.2.4.1)
Acetoin dehydrogenase E1 component alpha subunit n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AF12_9FIRM
Acetoin dehydrogenase E1 component alpha subunit {ECO:0000313|EMBL:CCX40454.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
L2_047_000M1_scaffold_1062_13
Oscillibacter valericigenes, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9643..10464)
DNA (822bp) protein (274aa)
acoA; acetoin dehydrogenase E1 component alpha subunit (EC:1.2.4.1)
Acetoin dehydrogenase E1 component alpha subunit {ECO:0000313|EMBL:BAK99326.1}; EC=1.2.4.1 {ECO:0000313|EMBL:BAK99326.1};; TaxID=693746 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 /; Sjm18-20).;"
Acetoin dehydrogenase E1 component alpha subunit n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KP13_OSCVS
L2_047_000M1_scaffold_1062_14
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10451..11341)
DNA (891bp) protein (297aa)
Phosphogluconate dehydrogenase NAD binding domain protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7B9A4_9CLOT
Phosphogluconate dehydrogenase NAD binding domain protein {ECO:0000313|EMBL:CDD61946.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
2-hydroxy-3-oxopropionate reductase
L2_047_000M1_scaffold_1062_15
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11398..12441)
DNA (1044bp) protein (348aa)
TRAP transporter solute receptor, DctP family n=2 Tax=Oscillibacter RepID=U2RVE0_9FIRM
TRAP transporter solute receptor, DctP family {ECO:0000313|EMBL:ERK63872.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
putative transporter
L2_047_000M1_scaffold_1062_16
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12540..13820)
DNA (1281bp) protein (427aa)
TRAP transporter DctM subunit/tripartite ATP-independent periplasmic transporter solute receptor DctP family n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N668_9FIRM
TRAP transporter DctM subunit/tripartite ATP-independent periplasmic transporter solute receptor DctP family {ECO:0000313|EMBL:CCY97404.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
TRAP transporter, DctM subunit/tripartite ATP-independent periplasmic transporter solute receptor, DctP family
L2_047_000M1_scaffold_1062_17
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13817..14377)
DNA (561bp) protein (187aa)
TRAP-type C4-dicarboxylate transport system small permease component n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N114_9FIRM
TRAP-type C4-dicarboxylate transport system small permease component {ECO:0000313|EMBL:CCY97403.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
TRAP-type C4-dicarboxylate transport system, small permease component
L2_047_000M1_scaffold_1062_18
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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14860..16986
DNA (2127bp) protein (709aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EGS8_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEQ57413.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
AraC family transcriptional regulator
L2_047_000M1_scaffold_1062_19
Firmicutes bacterium CAG:466, Firmicutes, Bacteria

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17038..18042
DNA (1005bp) protein (335aa)
Lipoate--protein ligase {ECO:0000256|SAAS:SAAS00026637}; EC=2.7.7.63 {ECO:0000256|SAAS:SAAS00026637};; TaxID=1263025 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:466.;"
Lipoyltransferase and lipoate-protein ligase n=1 Tax=Firmicutes bacterium CAG:466 RepID=R6QAZ9_9FIRM
lipoate-protein ligase
L2_047_000M1_scaffold_1062_20
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

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18756..19352
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5ADK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX39077.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
ATPase
L2_047_000M1_scaffold_1062_21
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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19366..19983
DNA (618bp) protein (206aa)
Polysaccharide deacetylase family sporulation protein PdaB n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DFW3_9FIRM
Polysaccharide deacetylase family sporulation protein PdaB {ECO:0000313|EMBL:CCX74801.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
polysaccharide deacetylase
L2_047_000M1_scaffold_1062_22
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(20251..21147)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6M2N1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB88646.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
L2_047_000M1_scaffold_1062_23
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

comp(21144..21704)
DNA (561bp) protein (187aa)
Putative RNA polymerase ECF subfamily sigma factor n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LX59_9FIRM
Putative RNA polymerase ECF subfamily sigma factor {ECO:0000313|EMBL:CDB88299.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
RNA polymerase sigma-70 factor, ECF subfamily
L2_047_000M1_scaffold_1062_24
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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comp(22089..23501)
DNA (1413bp) protein (471aa)
Putative efflux protein MATE family n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DC04_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CDA81726.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
MATE efflux family protein
L2_047_000M1_scaffold_1062_25
unknown

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23765..23881
DNA (117bp) protein (39aa)

This feature has no annotations

L2_047_000M1_scaffold_1062_26
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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comp(23927..25567)
DNA (1641bp) protein (547aa)
Purine catabolism PurC domain protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6DUH5_9FIRM
Purine catabolism PurC domain protein {ECO:0000313|EMBL:CDA81577.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
transcriptional regulator
L2_047_000M1_scaffold_1062_27
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

Not on your lists

25762..27348
DNA (1587bp) protein (529aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6CYN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81578.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
lactate permease
L2_047_000M1_scaffold_1062_28
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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27368..28972
DNA (1605bp) protein (535aa)
Amidohydrolase 3 n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D9B4_9FIRM
Amidohydrolase 3 {ECO:0000313|EMBL:CDA81579.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
amidohydrolase 3
L2_047_000M1_scaffold_1062_29
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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29024..30010
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D1E6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA81580.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
Na+/H+ antiporter NhaC
Displaying 29 items

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