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L2_047_000M1_scaffold_1933

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_1933_1
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..643
DNA (642bp) protein (214aa)
Phage terminase, large subunit, PBSX family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NQ31_9FIRM
Phage terminase, large subunit, PBSX family {ECO:0000313|EMBL:EDN01956.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
putative terminase large subunit
L2_047_000M1_scaffold_1933_2
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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661..1896
DNA (1236bp) protein (412aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
valS; valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J1E9_9FIRM
L2_047_000M1_scaffold_1933_3
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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1988..2320
DNA (333bp) protein (111aa)
Anti-sigma factor antagonist n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IL71_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
anti-sigma F factor antagonist
L2_047_000M1_scaffold_1933_4
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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2310..2750
DNA (441bp) protein (147aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IRF3_9FIRM
Anti-sigma F factor {ECO:0000313|EMBL:CCY42854.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L2_047_000M1_scaffold_1933_5
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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2747..3448
DNA (702bp) protein (234aa)
RNA polymerase sigma-70 factor sigma-B/F/G subfamily n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IL33_9FIRM
RNA polymerase sigma-70 factor sigma-B/F/G subfamily {ECO:0000313|EMBL:CCY42853.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
putative RNA polymerase sigma factor
L2_047_000M1_scaffold_1933_6
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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3800..6232
DNA (2433bp) protein (811aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
pcrA; ATP-dependent DNA helicase PcrA (EC:3.6.1.-)
ATP-dependent helicase PcrA n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J1P1_9FIRM
L2_047_000M1_scaffold_1933_7
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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6271..6951
DNA (681bp) protein (227aa)
Sporulation protein YunB n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IRE8_9FIRM
Sporulation protein YunB {ECO:0000313|EMBL:CCY42849.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L2_047_000M1_scaffold_1933_8
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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6929..8902
DNA (1974bp) protein (658aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
ligA; DNA ligase (EC:6.5.1.2)
DNA ligase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J1D9_9FIRM
L2_047_000M1_scaffold_1933_9
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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8899..9576
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IRE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY42844.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
L2_047_000M1_scaffold_1933_10
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9870..10712)
DNA (843bp) protein (281aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJ72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO27668.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L2_047_000M1_scaffold_1933_11
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(10742..10924)
DNA (183bp) protein (61aa)
ADP-ribosylglycohydrolase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IN23_9FIRM
ADP-ribosylglycohydrolase {ECO:0000313|EMBL:CCY41709.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
ADP-ribosylation/Crystallin J1
L2_047_000M1_scaffold_1933_12
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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11320..12318
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J1D5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY42841.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L2_047_000M1_scaffold_1933_13
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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12350..13978
DNA (1629bp) protein (543aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IRD9_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CCY42839.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
N-acetylmuramoyl-L-alanine amidase
L2_047_000M1_scaffold_1933_14
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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14550..14864
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J1M6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY42837.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
L2_047_000M1_scaffold_1933_15
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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14885..15499
DNA (615bp) protein (205aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J1C9_9FIRM
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:CCY42836.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L2_047_000M1_scaffold_1933_16
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15496..15702
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NUF9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ05814.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
hypothetical protein
L2_047_000M1_scaffold_1933_17
unknown

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15861..16088
DNA (228bp) protein (76aa)

This feature has no annotations

L2_047_000M1_scaffold_1933_18
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(16073..16270)
DNA (198bp) protein (66aa)
Ferredoxin thioredoxin reductase catalytic beta chain n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J0A2_9FIRM
Ferredoxin thioredoxin reductase catalytic beta chain {ECO:0000313|EMBL:CCY42436.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein predicted by Glimmer/Critica
L2_047_000M1_scaffold_1933_19
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(16267..16575)
DNA (309bp) protein (103aa)
Thioredoxin n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5J0D0_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
thioredoxin
L2_047_000M1_scaffold_1933_20
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(16623..17729)
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IK07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY42430.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Glycosyltransferase Family 28-like b-glycosyltransferase
L2_047_000M1_scaffold_1933_21
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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comp(17726..18205)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IJV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY42428.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
hypothetical protein
Displaying 21 items

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