ggKbase home page

L2_047_000M1_scaffold_112

Search features with annotation key words

Displaying items 1-30 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_112_1
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..434
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UI59_RUMA7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU21312.1}; Flags: Precursor;; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L2_047_000M1_scaffold_112_2
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

461..1306
DNA (846bp) protein (282aa)
cell surface protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C377C7
Ig-like domain-containing surface protein {ECO:0000313|EMBL:CDE13173.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
cell surface protein
L2_047_000M1_scaffold_112_3
unknown

Not on your lists

1440..1541
DNA (102bp) protein (34aa)

This feature has no annotations

L2_047_000M1_scaffold_112_4
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1758..2438
DNA (681bp) protein (227aa)
4'-phosphopantetheinyl transferase sfp (EC:2.7.8.-)
Phosphopantetheine-protein transferase domain protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6RDQ7_9CLOT
Phosphopantetheine-protein transferase domain protein {ECO:0000313|EMBL:CDC41041.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L2_047_000M1_scaffold_112_5
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2513..3241
DNA (729bp) protein (243aa)
DNA-binding response regulator n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H5U0_9FIRM
DNA-binding response regulator {ECO:0000313|EMBL:CDE34720.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
response regulator
L2_047_000M1_scaffold_112_6
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3238..4542
DNA (1305bp) protein (435aa)
Sensor histidine kinase n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H4W8_9FIRM
Sensor histidine kinase {ECO:0000313|EMBL:CDE34719.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
sensor histidine kinase
L2_047_000M1_scaffold_112_7
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4631..5113)
DNA (483bp) protein (161aa)
Acetyltransferases (EC:2.3.1.-)
Acetyltransferases n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FBE5_9FIRM
Acetyltransferases {ECO:0000313|EMBL:CDE11986.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
L2_047_000M1_scaffold_112_8
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5129..5932)
DNA (804bp) protein (268aa)
Putative PHP domain protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H452_9FIRM
Putative PHP domain protein {ECO:0000313|EMBL:CDE34140.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
putative metal-dependent phosphoesterase, PHP family
L2_047_000M1_scaffold_112_9
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5929..6621)
DNA (693bp) protein (231aa)
Phosphonate C-P lyase system protein PhnL n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H7G3_9FIRM
Phosphonate C-P lyase system protein PhnL {ECO:0000313|EMBL:CDE34142.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
ABC-type phosphonate transport system, ATPase component
L2_047_000M1_scaffold_112_10
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6618..7796)
DNA (1179bp) protein (393aa)
Phosphonate metabolism protein PhnM n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H4B8_9FIRM
Phosphonate metabolism protein PhnM {ECO:0000313|EMBL:CDE34146.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
phosphonate metabolism protein PhnM
L2_047_000M1_scaffold_112_11
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7809..8642)
DNA (834bp) protein (278aa)
Phosphonate metabolism protein PhnK n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H578_9FIRM
Phosphonate metabolism protein PhnK {ECO:0000313|EMBL:CDE34148.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
ABC-type phosphonate transport system, ATPase component
L2_047_000M1_scaffold_112_12
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8629..9477)
DNA (849bp) protein (283aa)
Phosphonate metabolism protein PhnJ n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H4C2_9FIRM
Phosphonate metabolism protein PhnJ {ECO:0000313|EMBL:CDE34151.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
phnJ; carbon-phosphorus lyase complex subunit PhnJ
L2_047_000M1_scaffold_112_13
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9464..10537)
DNA (1074bp) protein (358aa)
Bacterial phosphonate metabolism protein (PhnI) n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H583_9FIRM
Bacterial phosphonate metabolism protein (PhnI) {ECO:0000313|EMBL:CDE34153.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
phosphonate metabolism protein
L2_047_000M1_scaffold_112_14
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10509..11111)
DNA (603bp) protein (201aa)
Phosphonate C-P lyase system protein PhnH n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H4C8_9FIRM
Phosphonate C-P lyase system protein PhnH {ECO:0000313|EMBL:CDE34156.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
phosphonate metabolism protein
L2_047_000M1_scaffold_112_15
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11108..11533)
DNA (426bp) protein (142aa)
hypothetical protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2CBC2
Phosphonate C-P lyase system protein PhnG {ECO:0000313|EMBL:CDD60699.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
phosphonate C-P lyase system protein PhnG
L2_047_000M1_scaffold_112_16
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11541..12401)
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z932_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:ENZ36255.1}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
ABC-type phosphate/phosphonate transport system, permease component
L2_047_000M1_scaffold_112_17
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12401..13195)
DNA (795bp) protein (265aa)
Transporter n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H6R0_9FIRM
Transporter {ECO:0000313|EMBL:CDE34678.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
ABC-type phosphate/phosphonate transport system, permease component
L2_047_000M1_scaffold_112_18
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13192..13974)
DNA (783bp) protein (261aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
Phosphonate ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H8Z7_9FIRM
phosphonate ABC transporter, ATP-binding protein
L2_047_000M1_scaffold_112_19
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13986..15068)
DNA (1083bp) protein (361aa)
Phosphonate ABC transporter phosphate-binding protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7B888_9CLOT
Phosphonate ABC transporter phosphate-binding protein {ECO:0000313|EMBL:CDD61014.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein
L2_047_000M1_scaffold_112_20
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15768..16094
DNA (327bp) protein (109aa)
HTH-type transcriptional activator HxlR n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KSC4_9FIRM
HTH-type transcriptional activator HxlR {ECO:0000313|EMBL:CDE77847.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
transcriptional regulator, MarR family
L2_047_000M1_scaffold_112_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16204..17070)
DNA (867bp) protein (289aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JV25_9FIRM
AraC-type DNA-binding domain-containing proteins
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ERJ96616.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L2_047_000M1_scaffold_112_22
Lachnospiraceae bacterium COE1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17415..18788
DNA (1374bp) protein (458aa)
Sugar (Glycoside-Pentoside-Hexuronide) transporter n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9KFL9_9FIRM
Sugar (Glycoside-Pentoside-Hexuronide) transporter {ECO:0000313|EMBL:EOS45031.1}; TaxID=1235793 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium COE1.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L2_047_000M1_scaffold_112_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18811..21825
DNA (3015bp) protein (1005aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
lacZ; beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase/beta-glucuronidase n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H5Y9_9FIRM
L2_047_000M1_scaffold_112_24
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21845..23140
DNA (1296bp) protein (432aa)
Galactokinase (EC:2.7.1.6)
GHMP kinase N-terminal domain protein n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5VSE2_9FIRM
GHMP kinase N-terminal domain protein {ECO:0000313|EMBL:CCZ83447.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
L2_047_000M1_scaffold_112_25
Eubacterium sp. CAG:115, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23240..24730
DNA (1491bp) protein (497aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=1262878 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:115.;"
UTP-hexose-1-phosphate uridylyltransferase (EC:2.7.7.10 2.7.7.12)
Galactose-1-phosphate uridylyltransferase n=1 Tax=Eubacterium sp. CAG:115 RepID=R5L7G2_9FIRM
L2_047_000M1_scaffold_112_26

Not on your lists

25204..27060
DNA (1857bp) protein (619aa)
Putative uncharacterized protein n=1 Tax=uncultured archaeon RepID=D1JAN3_9ARCH
Putative uncharacterized protein {ECO:0000313|EMBL:CBH39163.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
ATPase AAA
L2_047_000M1_scaffold_112_27
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27076..27996
DNA (921bp) protein (307aa)
Putative uncharacterized protein n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PHU7_CELJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE85162.1}; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio japonicus (strain Ueda107) (Pseudomonas fluorescens subsp.; cellulosa).;"
L2_047_000M1_scaffold_112_28
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28046..28597
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GSG5_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA92308.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L2_047_000M1_scaffold_112_29
unknown

Not on your lists

28617..29276
DNA (660bp) protein (220aa)

This feature has no annotations

L2_047_000M1_scaffold_112_30
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29347..31071
DNA (1725bp) protein (575aa)
Phage tail sheath protein FI n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GQQ1_9FIRM
Phage tail sheath protein FI
Phage tail sheath protein FI {ECO:0000313|EMBL:CBL40126.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Displaying items 1-30 of 113 in total

View Taxonomy