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L2_047_000M1_scaffold_1000

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_1000_1
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(89..541)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JL29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS34701.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
spaR; Transcriptional regulatory protein SpaR
L2_047_000M1_scaffold_1000_2
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(818..1378)
DNA (561bp) protein (187aa)
Peptidase family M50 n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KZY6_9FIRM
Peptidase family M50 {ECO:0000313|EMBL:CDE81346.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Peptidase family M50.
L2_047_000M1_scaffold_1000_3
unknown

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comp(1375..1692)
DNA (318bp) protein (106aa)

This feature has no annotations

L2_047_000M1_scaffold_1000_4
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2409..3710
DNA (1302bp) protein (434aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CKN0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO24338.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
iron-sulfur cluster-binding protein, rieske family
L2_047_000M1_scaffold_1000_5
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3725..4990)
DNA (1266bp) protein (422aa)
enolase (EC:4.2.1.11)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318, ECO:0000313|EMBL:CBL17619.1}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318, ECO:0000313|EMBL:CBL17619.1};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
Enolase n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LDC4_RUMC1
L2_047_000M1_scaffold_1000_6
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5004..5597)
DNA (594bp) protein (198aa)
Rubrerythrin n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7A2V3_9FIRM
Rubrerythrin {ECO:0000313|EMBL:KHS56984.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
Rubrerythrin
L2_047_000M1_scaffold_1000_7
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5661..6521)
DNA (861bp) protein (287aa)
Glycosyl hydrolase family 25 n=1 Tax=Turicibacter sanguinis PC909 RepID=D4W910_9FIRM
Glycosyl hydrolase family 25 {ECO:0000313|EMBL:EFF62584.1}; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter sanguinis PC909.;"
hypothetical protein
L2_047_000M1_scaffold_1000_8
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6611..6853)
DNA (243bp) protein (81aa)
Acyl carrier protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MTK0_9FIRM
Acyl carrier protein {ECO:0000313|EMBL:CDF03143.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
Putative acyl carrier protein
L2_047_000M1_scaffold_1000_9
Ruminococcus sp. CAG:254, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6865..8655)
DNA (1791bp) protein (597aa)
HAD-superfamily phosphatase subfamily IIIC/FkbH-like domain n=1 Tax=Ruminococcus sp. CAG:254 RepID=R5VLF7_9FIRM
HAD-superfamily phosphatase subfamily IIIC/FkbH-like domain {ECO:0000313|EMBL:CCZ84381.1}; TaxID=1262953 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:254.;"
HAD-superfamily phosphatase, subfamily IIIC/FkbH-like domain
L2_047_000M1_scaffold_1000_10
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8683..10092)
DNA (1410bp) protein (470aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LDC0_RUMC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL17615.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L2_047_000M1_scaffold_1000_11
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10107..11510)
DNA (1404bp) protein (468aa)
Predicted membrane protein involved in D-alanine export n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7AAZ0_9FIRM
Predicted membrane protein involved in D-alanine export {ECO:0000313|EMBL:CDD52639.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
Predicted membrane protein involved in D-alanine export
L2_047_000M1_scaffold_1000_12
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11881..12849)
DNA (969bp) protein (323aa)
Band 7 protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T203_9FIRM
hypothetical protein
Band 7 protein {ECO:0000313|EMBL:CDC67463.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_047_000M1_scaffold_1000_13
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12865..13317)
DNA (453bp) protein (151aa)
Membrane protein implicated in regulation of membrane protease activity n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7AJY8_9FIRM
Membrane protein implicated in regulation of membrane protease activity
Membrane protein implicated in regulation of membrane protease activity {ECO:0000313|EMBL:CDD53736.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
L2_047_000M1_scaffold_1000_14
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13544..13762)
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A6Q3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37419.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L2_047_000M1_scaffold_1000_15
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13893..14327)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MLG4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF01909.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
hypothetical protein
L2_047_000M1_scaffold_1000_16
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14507..15949
DNA (1443bp) protein (481aa)
Glucanase {ECO:0000256|RuleBase:RU361167}; EC=3.2.1.- {ECO:0000256|RuleBase:RU361167};; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
Endoglucanase Y (EC:3.2.1.4)
Endoglucanase Y n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H3F2_9FIRM
L2_047_000M1_scaffold_1000_17
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16065..16979)
DNA (915bp) protein (305aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:581.;"
thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin reductase n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NPQ4_9FIRM
L2_047_000M1_scaffold_1000_18
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17364..18569
DNA (1206bp) protein (402aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37849
hypothetical protein
L2_047_000M1_scaffold_1000_19
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18572..18736
DNA (165bp) protein (55aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37847
Uncharacterized protein {ECO:0000313|EMBL:EWM54885.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
hypothetical protein
L2_047_000M1_scaffold_1000_20
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18803..19246)
DNA (444bp) protein (148aa)
Transcription activator effector binding n=1 Tax=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) RepID=B8FW41_DESHD
transcription activator effector binding protein
Bacterial transcription activator, effector binding domain {ECO:0000313|EMBL:CDX00780.1}; TaxID=49338 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (Desulfitobacterium frappieri).;"
L2_047_000M1_scaffold_1000_21
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19315..20211)
DNA (897bp) protein (299aa)
Helix-turn-helix type 11 domain protein n=1 Tax=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) RepID=B8FW42_DESHD
hypothetical protein
Helix-turn-helix type 11 domain protein {ECO:0000313|EMBL:ACL18828.1}; TaxID=272564 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (strain DCB-2 / DSM 10664).;"
L2_047_000M1_scaffold_1000_22
Clostridium sp. CAG:62, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20266..21240)
DNA (975bp) protein (325aa)
Biotin synthase {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00009987}; EC=2.8.1.6 {ECO:0000256|HAMAP-Rule:MF_01694, ECO:0000256|SAAS:SAAS00250466};; TaxID=1262828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:62.;"
biotin synthase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C378DB
biotin synthase
Displaying 22 items

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