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L2_047_000M1_scaffold_1095

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_1095_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(452..2035)
DNA (1584bp) protein (528aa)
Peptide chain release factor 3 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T347_9FIRM
prfC; Peptide chain release factor 3
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L2_047_000M1_scaffold_1095_2
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2383..3522)
DNA (1140bp) protein (380aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
alr; Alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7A4S5_9FIRM
L2_047_000M1_scaffold_1095_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3769..4605
DNA (837bp) protein (279aa)
Amylovoran biosynthesis glycosyltransferase AmsE n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B6G7_9FIRM
Amylovoran biosynthesis glycosyltransferase AmsE {ECO:0000313|EMBL:CDA54576.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Glycosyltransferases, probably involved in cell wall biogenesis
L2_047_000M1_scaffold_1095_4
Eubacterium sp. CAG:156, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4602..5780
DNA (1179bp) protein (393aa)
CDP-glycerol:poly(Glycerophosphate) glycerophosphotransferase n=1 Tax=Eubacterium sp. CAG:156 RepID=R5YRF7_9FIRM
CDP-glycerol:poly(Glycerophosphate) glycerophosphotransferase {ECO:0000313|EMBL:CDA29380.1}; TaxID=1262880 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:156.;"
glycosyl/glycerophosphate transferase
L2_047_000M1_scaffold_1095_5
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5893..7056
DNA (1164bp) protein (388aa)
Metallo-beta-lactamase domain protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BDB0_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EEG88456.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
conserved hypothetical protein
L2_047_000M1_scaffold_1095_6
Acholeplasma sp. CAG:878, Acholeplasma, Acholeplasmatales, Mollicutes, Tenericutes, Bacteria

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comp(7140..8381)
DNA (1242bp) protein (414aa)
Uncharacterized protein n=1 Tax=Acholeplasma sp. CAG:878 RepID=R5HTD1_9MOLU
Uncharacterized protein {ECO:0000313|EMBL:CCY27781.1}; TaxID=1262686 species="Bacteria; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Acholeplasma; environmental samples.;" source="Acholeplasma sp. CAG:878.;"
glycosyl/glycerophosphate transferase, teichoic acid biosynthesis
L2_047_000M1_scaffold_1095_7
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8511..8888)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LWE1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93804.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted membrane protein
L2_047_000M1_scaffold_1095_8
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9001..9489)
DNA (489bp) protein (163aa)
Transcriptional repressor NrdR n=2 Tax=Ruminococcus RepID=D4LA64_RUMC1
transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L2_047_000M1_scaffold_1095_9
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9486..10286)
DNA (801bp) protein (267aa)
Sugar phosphate isomerases/epimerases n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LA65_RUMC1
Sugar phosphate isomerases/epimerases
Sugar phosphate isomerases/epimerases {ECO:0000313|EMBL:CBL16510.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L2_047_000M1_scaffold_1095_10

Not on your lists

comp(10625..11563)
DNA (939bp) protein (313aa)
SecD/SecF/SecDF export membrane protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SEM3_9ZZZZ
SecD/SecF/SecDF export membrane protein {ECO:0000313|EMBL:EKC53839.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
protein-export membrane protein SecF
L2_047_000M1_scaffold_1095_11
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11556..12959)
DNA (1404bp) protein (468aa)
Protein translocase subunit SecD n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MMM1_9FIRM
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
secD; Protein-export membrane protein SecD
L2_047_000M1_scaffold_1095_12
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(13133..13348)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YDR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14503.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein predicted by Glimmer/Critica
L2_047_000M1_scaffold_1095_13
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13508..13729
DNA (222bp) protein (74aa)
Helix-turn-helix domain protein n=1 Tax=Eubacterium sp. CAG:202 RepID=R6MWK9_9FIRM
Helix-turn-helix domain protein {ECO:0000313|EMBL:CDC03225.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
helix-turn-helix domain-containing protein
L2_047_000M1_scaffold_1095_14
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14097..15533)
DNA (1437bp) protein (479aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7GRV1_9FIRM
L2_047_000M1_scaffold_1095_15
unknown

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15812..16246
DNA (435bp) protein (145aa)

This feature has no annotations

L2_047_000M1_scaffold_1095_16
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16303..16464
DNA (162bp) protein (54aa)
Rubredoxin n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D8T4_9CLOT
Rubredoxin {ECO:0000256|PIRNR:PIRNR000071}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
rubredoxin
L2_047_000M1_scaffold_1095_17
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16950..17963
DNA (1014bp) protein (338aa)
Stage V sporulation protein AD n=2 Tax=Ruminococcus RepID=D4LAC8_RUMC1
stage V sporulation protein AD
Stage V sporulation protein AD {ECO:0000313|EMBL:CBL16573.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L2_047_000M1_scaffold_1095_18
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17974..18327
DNA (354bp) protein (118aa)
Stage V sporulation protein AE n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H4P2_9FIRM
Stage V sporulation protein AE {ECO:0000313|EMBL:CDE33973.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
stage V sporulation protein AE
L2_047_000M1_scaffold_1095_19
Coprococcus sp. CAG:131, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18859..19434
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. CAG:131 RepID=R6KVD4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB79238.1}; TaxID=1262862 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:131.;"
L2_047_000M1_scaffold_1095_20
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19769..20560
DNA (792bp) protein (264aa)
Sirohydrochlorin cobaltochelatase (EC:4.99.1.3)
Sirohydrochlorin cobaltochelatase {ECO:0000313|EMBL:ADY55642.1}; EC=4.99.1.3 {ECO:0000313|EMBL:ADY55642.1};; Flags: Precursor;; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR).;"
Sirohydrochlorin cobaltochelatase n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0SVT6_SYNGF
L2_047_000M1_scaffold_1095_21
unknown

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comp(20606..21217)
DNA (612bp) protein (204aa)

This feature has no annotations

L2_047_000M1_scaffold_1095_22
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21300..22010)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6NB24_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05489.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L2_047_000M1_scaffold_1095_23
unknown

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comp(22240..22518)
DNA (279bp) protein (93aa)

This feature has no annotations

L2_047_000M1_scaffold_1095_24
unknown

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comp(22576..22854)
DNA (279bp) protein (93aa)

This feature has no annotations

L2_047_000M1_scaffold_1095_25
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22889..24250)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9E9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG31859.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L2_047_000M1_scaffold_1095_26
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24439..25344)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3ANE3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFC96660.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
hypothetical protein
L2_047_000M1_scaffold_1095_27
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25427..26092)
DNA (666bp) protein (222aa)
Transcriptional regulator, TetR family n=1 Tax=Clostridium hathewayi DSM 13479 RepID=D3ANE2_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EFC96659.1}; TaxID=566550 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi DSM 13479.;"
TetR family transcriptional regulator
L2_047_000M1_scaffold_1095_28
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26253..26474)
DNA (222bp) protein (74aa)
N-acetyltransferase GCN5 n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C3795C
Predicted acetyltransferase
Predicted acetyltransferase {ECO:0000313|EMBL:CDD54278.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
L2_047_000M1_scaffold_1095_29
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26754..28688)
DNA (1935bp) protein (645aa)
GHKL domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H6X3_9CLOT
GHKL domain protein {ECO:0000313|EMBL:EJF41033.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
hypothetical protein
L2_047_000M1_scaffold_1095_30
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28707..29105)
DNA (399bp) protein (133aa)
T/G mismatch-specific endonuclease (EC:3.1.-.-)
DNA mismatch endonuclease Vsr n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YXS0_9FIRM
DNA mismatch endonuclease Vsr {ECO:0000313|EMBL:EPD62567.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
Displaying items 1-30 of 35 in total

View Taxonomy