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L2_047_000M1_scaffold_1213

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_000M1_scaffold_1213_1
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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239..1054
DNA (816bp) protein (272aa)
Chromosome segregation ATPase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MRJ0_9FIRM
Chromosome segregation ATPase {ECO:0000313|EMBL:CDF03185.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
chromosome segregation ATPase
L2_047_000M1_scaffold_1213_2
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1055..1888
DNA (834bp) protein (278aa)
plasmid partitioning protein ParB n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36FCD
Plasmid partitioning protein ParB {ECO:0000313|EMBL:EWM53109.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
chromosome segregation DNA-binding protein
L2_047_000M1_scaffold_1213_3
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1904..3175
DNA (1272bp) protein (424aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
serS; Serine-tRNA ligase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XYC3_9FIRM
L2_047_000M1_scaffold_1213_4
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3552..5018
DNA (1467bp) protein (489aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
inosine 5''''-monophosphate dehydrogenase n=1 Tax=Ruminococcus flavefaciens RepID=UPI00031D56F0
L2_047_000M1_scaffold_1213_5
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5741..8122
DNA (2382bp) protein (794aa)
chitobiose phosphorylase (EC:2.4.1.-)
N,N''''-diacetylchitobiose phosphorylase n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37DC1
Chitobiose phosphorylase {ECO:0000313|EMBL:CDF01670.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
L2_047_000M1_scaffold_1213_6
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8176..9957)
DNA (1782bp) protein (594aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00046836}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00046836};; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L075_9FIRM
1,4-alpha-glucan-branching protein
L2_047_000M1_scaffold_1213_7
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9944..10399)
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Bacillus massiliosenegalensis RepID=UPI0002FE8D96
Uncharacterized protein {ECO:0000313|EMBL:CDE81355.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
hypothetical protein
L2_047_000M1_scaffold_1213_8
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10511..11365)
DNA (855bp) protein (285aa)
Zinc transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K4H1_9FIRM
Zinc transport system permease {ECO:0000313|EMBL:EGN44076.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
ABC transporter
L2_047_000M1_scaffold_1213_9
Lachnospiraceae bacterium JC7, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11362..12075)
DNA (714bp) protein (238aa)
ABC-type Mn/Zn transport systems, ATPase component (EC:3.6.3.-)
ABC-type Mn/Zn transport systems ATPase component n=2 Tax=Clostridiales RepID=R7DAJ6_9FIRM
ATPase component of Mn/Zn ABC-type transporter {ECO:0000313|EMBL:ETP73648.1}; TaxID=1165092 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium JC7.;"
L2_047_000M1_scaffold_1213_10
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12088..13053)
DNA (966bp) protein (322aa)
ABC transporter, substrate-binding protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CI10_9CLOT
ABC-type metal ion transport system, periplasmic component/surface adhesin {ECO:0000313|EMBL:EXG84401.1}; Flags: Precursor;; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
periplasmic solute binding protein
L2_047_000M1_scaffold_1213_11
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13202..13486
DNA (285bp) protein (95aa)
YabP family protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C36E9D
Sporulation protein YabP {ECO:0000313|EMBL:CDF02071.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
sporulation protein YabP
L2_047_000M1_scaffold_1213_12
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13497..14072
DNA (576bp) protein (192aa)
Spore cortex protein YabQ (Spore_YabQ) n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LAT6_RUMC1
Spore cortex protein YabQ (Spore_YabQ).
Spore cortex protein YabQ (Spore_YabQ) {ECO:0000313|EMBL:CBL16731.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L2_047_000M1_scaffold_1213_13
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14026..14334
DNA (309bp) protein (103aa)
Septum formation initiator n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FBZ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EWM54862.1}; TaxID=1341157 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
hypothetical protein predicted by Glimmer/Critica
L2_047_000M1_scaffold_1213_14
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14382..14807
DNA (426bp) protein (142aa)
Predicted RNA binding protein (Contains ribosomal protein S1 domain) n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MLX1_9FIRM
Predicted RNA binding protein (Contains ribosomal protein S1 domain) {ECO:0000313|EMBL:CDF02074.1}; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
Predicted RNA binding protein (contains ribosomal protein S1 domain)
L2_047_000M1_scaffold_1213_15
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14970..15209
DNA (240bp) protein (80aa)
FeoA domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9V5_9CLOT
FeoA domain protein {ECO:0000313|EMBL:EEG31710.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
FeoA family protein
L2_047_000M1_scaffold_1213_16
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15288..17090)
DNA (1803bp) protein (601aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452, ECO:0000256|SAAS:SAAS00222031}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
Phosphoenolpyruvate carboxykinase (GTP) (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7KRJ4_9FIRM
Displaying 16 items

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