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L2_047_064G1_scaffold_79

Search features with annotation key words

Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_064G1_scaffold_79_1
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

1..393
DNA (393bp) protein (131aa)
hypothetical protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B3A83C
Uncharacterised protein {ECO:0000313|EMBL:CRH67736.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
L2_047_064G1_scaffold_79_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(406..786)
DNA (381bp) protein (127aa)
UPI0003D690BC related cluster n=1 Tax=unknown RepID=UPI0003D690BC
Uncharacterized protein {ECO:0000313|EMBL:ETI83488.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_064G1_scaffold_79_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1147..3894
DNA (2748bp) protein (916aa)
Pyruvate dehydrogenase E1 component {ECO:0000256|PIRNR:PIRNR000156}; EC=1.2.4.1 {ECO:0000256|PIRNR:PIRNR000156};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
pyruvate dehydrogenase E1 component, homodimeric type (EC:1.2.4.1)
UPI0003D65EBC related cluster n=1 Tax=unknown RepID=UPI0003D65EBC
L2_047_064G1_scaffold_79_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4034..4378
DNA (345bp) protein (115aa)
UPI0003D5C27F related cluster n=1 Tax=unknown RepID=UPI0003D5C27F
Uncharacterized protein {ECO:0000313|EMBL:ETI83490.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_064G1_scaffold_79_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4382..4513)
DNA (132bp) protein (44aa)
Uncharacterized protein {ECO:0000313|EMBL:ETI83491.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_064G1_scaffold_79_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5339..5728
DNA (390bp) protein (130aa)
UPI0003D63C15 related cluster n=1 Tax=unknown RepID=UPI0003D63C15
Uncharacterized protein {ECO:0000313|EMBL:ETI83492.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_064G1_scaffold_79_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6004..6270)
DNA (267bp) protein (89aa)
UPI0003D6563A related cluster n=1 Tax=unknown RepID=UPI0003D6563A
Uncharacterized protein {ECO:0000313|EMBL:ETI83493.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_064G1_scaffold_79_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6446..6934)
DNA (489bp) protein (163aa)
UPI0003D60F3B related cluster n=1 Tax=unknown RepID=UPI0003D60F3B
Uncharacterized protein {ECO:0000313|EMBL:ETI83494.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_064G1_scaffold_79_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7326..7757)
DNA (432bp) protein (144aa)
UPI0003D64344 related cluster n=1 Tax=unknown RepID=UPI0003D64344
Uncharacterized protein {ECO:0000313|EMBL:ETI83495.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_064G1_scaffold_79_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7759..8256)
DNA (498bp) protein (166aa)
UPI0003D62AF1 related cluster n=1 Tax=unknown RepID=UPI0003D62AF1
Uncharacterized protein {ECO:0000313|EMBL:ETI83496.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_064G1_scaffold_79_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8882..9373)
DNA (492bp) protein (164aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
def2; peptide deformylase (EC:3.5.1.88)
peptide deformylase n=1 Tax=Varibaculum cambriense RepID=UPI0003B6E768
L2_047_064G1_scaffold_79_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(9377..11230)
DNA (1854bp) protein (618aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00089874};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
proS; proline--tRNA ligase (EC:6.1.1.15)
UPI0003D62D64 related cluster n=1 Tax=unknown RepID=UPI0003D62D64
L2_047_064G1_scaffold_79_13
unknown

Not on your lists

11567..12106
DNA (540bp) protein (180aa)

This feature has no annotations

L2_047_064G1_scaffold_79_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11994..13124)
DNA (1131bp) protein (377aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
UPI0003D5CC65 related cluster n=1 Tax=unknown RepID=UPI0003D5CC65
L2_047_064G1_scaffold_79_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13295..14584)
DNA (1290bp) protein (430aa)
UPI0003D642DF related cluster n=1 Tax=unknown RepID=UPI0003D642DF
Uncharacterized protein {ECO:0000313|EMBL:ETI83500.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
peptidase M50
L2_047_064G1_scaffold_79_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14594..15808)
DNA (1215bp) protein (405aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Varibaculum cambriense RepID=UPI0003B52CA3
1-deoxy-D-xylulose 5-phosphate reductoisomerase
L2_047_064G1_scaffold_79_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15863..16414)
DNA (552bp) protein (184aa)
cell division protein DivIVA n=1 Tax=Varibaculum cambriense RepID=UPI0003B3A3BE
DivIVA protein {ECO:0000313|EMBL:ETI83502.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_064G1_scaffold_79_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16411..17736)
DNA (1326bp) protein (442aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D687FD related cluster n=1 Tax=unknown RepID=UPI0003D687FD
ribosomal RNA large subunit methyltransferase N
L2_047_064G1_scaffold_79_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17753..18643)
DNA (891bp) protein (297aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D648C7 related cluster n=1 Tax=unknown RepID=UPI0003D648C7
phosphatidate cytidylyltransferase
L2_047_064G1_scaffold_79_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18644..19201)
DNA (558bp) protein (186aa)
UPI0003D5B845 related cluster n=1 Tax=unknown RepID=UPI0003D5B845
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ribosome recycling factor
L2_047_064G1_scaffold_79_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19206..19940)
DNA (735bp) protein (245aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D60E3F related cluster n=1 Tax=unknown RepID=UPI0003D60E3F
uridylate kinase
L2_047_064G1_scaffold_79_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20126..20962)
DNA (837bp) protein (279aa)
UPI0003D5DF60 related cluster n=1 Tax=unknown RepID=UPI0003D5DF60
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
tsf; elongation factor EF1B
L2_047_064G1_scaffold_79_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(20997..21899)
DNA (903bp) protein (301aa)
UPI0003D599B8 related cluster n=1 Tax=unknown RepID=UPI0003D599B8
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ribosomal protein S2
L2_047_064G1_scaffold_79_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22317..22862
DNA (546bp) protein (182aa)
UPI0003D62A81 related cluster n=1 Tax=unknown RepID=UPI0003D62A81
Putative peptidase M23B {ECO:0000313|EMBL:ETI83509.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
peptidase m23
L2_047_064G1_scaffold_79_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23020..23931)
DNA (912bp) protein (304aa)
UPI0003D5EDF0 related cluster n=1 Tax=unknown RepID=UPI0003D5EDF0
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
recombinase XerC
L2_047_064G1_scaffold_79_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23934..25103)
DNA (1170bp) protein (390aa)
UPI0003D5B6EE related cluster n=1 Tax=unknown RepID=UPI0003D5B6EE
DNA protecting protein DprA {ECO:0000313|EMBL:ETI83511.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
DNA protecting protein DprA
L2_047_064G1_scaffold_79_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25134..26687)
DNA (1554bp) protein (518aa)
UPI0003D62F84 related cluster n=1 Tax=unknown RepID=UPI0003D62F84
Uncharacterized protein {ECO:0000313|EMBL:ETI83512.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ATPase
L2_047_064G1_scaffold_79_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26689..27057)
DNA (369bp) protein (123aa)
UPI0003D625FD related cluster n=1 Tax=unknown RepID=UPI0003D625FD
UPF0102 protein Q618_VCMC00001G1094 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_064G1_scaffold_79_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27219..28775)
DNA (1557bp) protein (519aa)
UPI0003D67C74 related cluster n=1 Tax=unknown RepID=UPI0003D67C74
Uncharacterized protein {ECO:0000313|EMBL:ETI83514.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
alkyl hydroperoxide reductase subunit F
L2_047_064G1_scaffold_79_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28778..29341)
DNA (564bp) protein (188aa)
UPI0003D62168 related cluster n=1 Tax=unknown RepID=UPI0003D62168
Uncharacterized protein {ECO:0000313|EMBL:ETI83515.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
peroxiredoxin
Displaying items 1-30 of 80 in total

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