ggKbase home page

L2_047_064G1_scaffold_281

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_064G1_scaffold_281_1
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..635)
DNA (633bp) protein (211aa)
UPI0003D5FA84 related cluster n=1 Tax=unknown RepID=UPI0003D5FA84
UDP-N-acetylmuramate-L-alanine ligase {ECO:0000313|EMBL:ETI82926.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UDP-N-acetylmuramate--alanine ligase
L2_047_064G1_scaffold_281_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(632..1753)
DNA (1122bp) protein (374aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082867}; EC=2.4.1.227 {ECO:0000256|HAMAP-Rule:MF_00033, ECO:0000256|SAAS:SAAS00082938};; Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase {ECO:0000256|HAMAP-Rule:MF_00033}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D68B07 related cluster n=1 Tax=unknown RepID=UPI0003D68B07
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
L2_047_064G1_scaffold_281_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1743..3089)
DNA (1347bp) protein (449aa)
UPI0003D628C8 related cluster n=1 Tax=unknown RepID=UPI0003D628C8
Uncharacterized protein {ECO:0000313|EMBL:ETI82924.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
spoVE; stage V sporulation protein E
L2_047_064G1_scaffold_281_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3092..4531)
DNA (1440bp) protein (480aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D63D9E related cluster n=1 Tax=unknown RepID=UPI0003D63D9E
UDP-N-acetylmuramoylalanine--D-glutamate ligase
L2_047_064G1_scaffold_281_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4528..5640)
DNA (1113bp) protein (371aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
mraY; phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
UPI0003D60816 related cluster n=1 Tax=unknown RepID=UPI0003D60816
L2_047_064G1_scaffold_281_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5640..7169)
DNA (1530bp) protein (510aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D6752B related cluster n=1 Tax=unknown RepID=UPI0003D6752B
UDP-N-acetylmuramoylalanyl-D-glutamyl-2 C 6-diaminopimelate/D-alanyl-D-alanyl ligase
L2_047_064G1_scaffold_281_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7209..9155)
DNA (1947bp) protein (649aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
UPI0003D5A93E related cluster n=1 Tax=unknown RepID=UPI0003D5A93E
Uncharacterized protein {ECO:0000313|EMBL:ETI82920.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_064G1_scaffold_281_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9165..9587)
DNA (423bp) protein (141aa)
UPI0003D66719 related cluster n=1 Tax=unknown RepID=UPI0003D66719
Uncharacterized protein {ECO:0000313|EMBL:ETI82919.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_064G1_scaffold_281_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9580..10575)
DNA (996bp) protein (332aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D628C1 related cluster n=1 Tax=unknown RepID=UPI0003D628C1
S-adenosyl-methyltransferase MraW
L2_047_064G1_scaffold_281_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10697..11128)
DNA (432bp) protein (144aa)
UPI0003D61C2A related cluster n=1 Tax=unknown RepID=UPI0003D61C2A
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
mraZ; cell division protein MraZ
L2_047_064G1_scaffold_281_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11469..11891)
DNA (423bp) protein (141aa)
UPI0003D639CC related cluster n=1 Tax=unknown RepID=UPI0003D639CC
Uncharacterized protein {ECO:0000313|EMBL:ETI82916.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_064G1_scaffold_281_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11948..13201)
DNA (1254bp) protein (418aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D69922 related cluster n=1 Tax=unknown RepID=UPI0003D69922
DNA polymerase IV
L2_047_064G1_scaffold_281_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13205..14542)
DNA (1338bp) protein (446aa)
UPI0003D5E096 related cluster n=1 Tax=unknown RepID=UPI0003D5E096
Uncharacterized protein {ECO:0000313|EMBL:ETI82914.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_064G1_scaffold_281_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14674..16956
DNA (2283bp) protein (761aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D656FA related cluster n=1 Tax=unknown RepID=UPI0003D656FA
UvrD/REP helicase
L2_047_064G1_scaffold_281_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17068..18240
DNA (1173bp) protein (391aa)
UPI0003D5F9CB related cluster n=1 Tax=unknown RepID=UPI0003D5F9CB
Uncharacterized protein {ECO:0000313|EMBL:ETI82912.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
D-3-phosphoglycerate dehydrogenase
L2_047_064G1_scaffold_281_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18209..18703)
DNA (495bp) protein (165aa)
NrdR family transcriptional regulator n=1 Tax=Varibaculum cambriense RepID=UPI0003B68BDA
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
NrdR family transcripitonal regulator
L2_047_064G1_scaffold_281_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18918..19541)
DNA (624bp) protein (208aa)
UPI0003D686B4 related cluster n=1 Tax=unknown RepID=UPI0003D686B4
Uncharacterized protein {ECO:0000313|EMBL:ETI82910.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_064G1_scaffold_281_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19661..20350
DNA (690bp) protein (230aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008054};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
LexA family transcriptional regulator (EC:3.4.21.88)
UPI0003D5E2CD related cluster n=1 Tax=unknown RepID=UPI0003D5E2CD
L2_047_064G1_scaffold_281_19
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20707..21111
DNA (405bp) protein (135aa)
osmotically inducible protein OsmC n=1 Tax=Varibaculum cambriense RepID=UPI0003B44EF8
OsmC family protein {ECO:0000313|EMBL:ETI82908.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_064G1_scaffold_281_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21209..22789)
DNA (1581bp) protein (527aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00276926};; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D67B8C related cluster n=1 Tax=unknown RepID=UPI0003D67B8C
UDP-N-acetylmuramyl-tripeptide synthetase
L2_047_064G1_scaffold_281_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22856..23635)
DNA (780bp) protein (260aa)
UPI0003D63BD7 related cluster n=1 Tax=unknown RepID=UPI0003D63BD7
PHP protein {ECO:0000313|EMBL:ETI82906.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
PHP domain-containing protein
L2_047_064G1_scaffold_281_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23743..25308
DNA (1566bp) protein (522aa)
Xaa-Pro aminopeptidase n=1 Tax=Varibaculum cambriense RepID=UPI0003B6F378
Uncharacterized protein {ECO:0000313|EMBL:ETI82905.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
peptidase M24
L2_047_064G1_scaffold_281_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25344..26102)
DNA (759bp) protein (253aa)
UPI0003D62381 related cluster n=1 Tax=unknown RepID=UPI0003D62381
Uncharacterized protein {ECO:0000313|EMBL:ETI82904.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ABC transporter ATP-binding protein
L2_047_064G1_scaffold_281_24
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26108..26761)
DNA (654bp) protein (218aa)
UPI0003D6250A related cluster n=1 Tax=unknown RepID=UPI0003D6250A
Uncharacterized protein {ECO:0000313|EMBL:ETI82903.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
amino acid ABC transporter membrane protein
L2_047_064G1_scaffold_281_25
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26807..27613)
DNA (807bp) protein (269aa)
UPI0003D5F7A7 related cluster n=1 Tax=unknown RepID=UPI0003D5F7A7
Uncharacterized protein {ECO:0000313|EMBL:ETI82902.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
amino acid ABC transporter ATP-binding protein
L2_047_064G1_scaffold_281_26
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27802..29637)
DNA (1836bp) protein (612aa)
ABC transporter ATP-binding protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B686A7
Uncharacterized protein {ECO:0000313|EMBL:ETI82901.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ABC-type putative dipeptide/oligopeptide transporter, ATPase subunit
L2_047_064G1_scaffold_281_27
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29670..30617)
DNA (948bp) protein (316aa)
peptide ABC transporter permease n=1 Tax=Varibaculum cambriense RepID=UPI0003B5699E
Uncharacterized protein {ECO:0000313|EMBL:ETI82900.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_064G1_scaffold_281_28
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30610..31536)
DNA (927bp) protein (309aa)
ABC transporter permease n=1 Tax=Varibaculum cambriense RepID=UPI0003B76DF5
Uncharacterized protein {ECO:0000313|EMBL:ETI82899.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ABC transporter permease
L2_047_064G1_scaffold_281_29
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31683..33341)
DNA (1659bp) protein (553aa)
ABC transporter substrate-binding protein n=1 Tax=Varibaculum cambriense RepID=UPI0003B61066
Uncharacterized protein {ECO:0000313|EMBL:ETI82898.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative peptide transport system secreted protein
L2_047_064G1_scaffold_281_30
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33590..35107)
DNA (1518bp) protein (506aa)
UPI0003D67E3B related cluster n=1 Tax=unknown RepID=UPI0003D67E3B
Uncharacterized protein {ECO:0000313|EMBL:ETI82897.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
gamma-aminobutyrate permease
Displaying items 1-30 of 32 in total

View Taxonomy