ggKbase home page

L2_047_064G1_scaffold_353

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_064G1_scaffold_353_1
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3..371
DNA (369bp) protein (123aa)
UPI0003D61D1D related cluster n=1 Tax=unknown RepID=UPI0003D61D1D
RNA pseudouridine synthase {ECO:0000313|EMBL:ETI82430.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
ribosomal pseudouridine synthase
L2_047_064G1_scaffold_353_2
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

599..1354
DNA (756bp) protein (252aa)
glutamine amidotransferase (EC:6.3.5.2)
UPI0003D6070F related cluster n=1 Tax=unknown RepID=UPI0003D6070F
Uncharacterized protein {ECO:0000313|EMBL:ETI82431.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_064G1_scaffold_353_3
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1365..2564
DNA (1200bp) protein (400aa)
Putative glutamate--cysteine ligase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; EC=6.3.2.2 {ECO:0000256|HAMAP-Rule:MF_01609};; Gamma-glutamylcysteine synthetase 2 {ECO:0000256|HAMAP-Rule:MF_01609}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D655B3 related cluster n=1 Tax=unknown RepID=UPI0003D655B3
carboxylate--amine ligase
L2_047_064G1_scaffold_353_4
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2889..4328)
DNA (1440bp) protein (480aa)
UPI0003D66937 related cluster n=1 Tax=unknown RepID=UPI0003D66937
Uncharacterized protein {ECO:0000313|EMBL:ETI82433.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
amino acid ABC transporter permease
L2_047_064G1_scaffold_353_5
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4590..5882
DNA (1293bp) protein (431aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
serine hydroxymethyltransferase (EC:2.1.2.1)
UPI0003D67F51 related cluster n=1 Tax=unknown RepID=UPI0003D67F51
L2_047_064G1_scaffold_353_6
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5956..6858
DNA (903bp) protein (301aa)
folD; methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
UPI0003D64963 related cluster n=1 Tax=unknown RepID=UPI0003D64963
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_064G1_scaffold_353_7
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6873..7982
DNA (1110bp) protein (370aa)
UPI0003D5E7E6 related cluster n=1 Tax=unknown RepID=UPI0003D5E7E6
Uncharacterized protein {ECO:0000313|EMBL:ETI82436.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
basic membrane protein
L2_047_064G1_scaffold_353_8
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8009..8857
DNA (849bp) protein (283aa)
exodeoxyribonuclease III n=1 Tax=Varibaculum cambriense RepID=UPI0003B59F16
Exodeoxyribonuclease III {ECO:0000313|EMBL:ETI82437.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
putative exodeoxyribonuclease III
L2_047_064G1_scaffold_353_9
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8911..10311)
DNA (1401bp) protein (467aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
fumarate lyase (EC:4.2.1.2)
UPI0003D5A837 related cluster n=1 Tax=unknown RepID=UPI0003D5A837
L2_047_064G1_scaffold_353_10
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10483..11358
DNA (876bp) protein (292aa)
UPI0003D62171 related cluster n=1 Tax=unknown RepID=UPI0003D62171
Uncharacterized protein {ECO:0000313|EMBL:ETI82439.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_064G1_scaffold_353_11
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11437..12186)
DNA (750bp) protein (250aa)
polyphosphate--glucose phosphotransferase (EC:2.7.1.63)
UPI0003D5D46E related cluster n=1 Tax=unknown RepID=UPI0003D5D46E
Uncharacterized protein {ECO:0000313|EMBL:ETI82440.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_064G1_scaffold_353_12
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12190..13101)
DNA (912bp) protein (304aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D61F45 related cluster n=1 Tax=unknown RepID=UPI0003D61F45
methionine aminopeptidase
L2_047_064G1_scaffold_353_13
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13272..14096)
DNA (825bp) protein (275aa)
UPI0003D6448A related cluster n=1 Tax=unknown RepID=UPI0003D6448A
LacI family transcriptional regulator {ECO:0000313|EMBL:ETI82442.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
LacI family transcriptional regulator
L2_047_064G1_scaffold_353_14
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


14292..15377
DNA (1086bp) protein (362aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
UPI0003D5E5ED related cluster n=1 Tax=unknown RepID=UPI0003D5E5ED
phenylalanyl-tRNA synthetase subunit alpha
L2_047_064G1_scaffold_353_15
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15380..18028
DNA (2649bp) protein (883aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
pheT; phenylalanine--tRNA ligase (EC:6.1.1.20)
UPI0003D5A81F related cluster n=1 Tax=unknown RepID=UPI0003D5A81F
L2_047_064G1_scaffold_353_16
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18253..18771
DNA (519bp) protein (173aa)
UPI0003D66BC7 related cluster n=1 Tax=unknown RepID=UPI0003D66BC7
Uncharacterized protein {ECO:0000313|EMBL:ETI82445.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
L2_047_064G1_scaffold_353_17
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19138..22611
DNA (3474bp) protein (1158aa)
UPI0003D62B34 related cluster n=1 Tax=unknown RepID=UPI0003D62B34
Uncharacterized protein {ECO:0000313|EMBL:ETI82446.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_064G1_scaffold_353_18
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22743..23525)
DNA (783bp) protein (261aa)
UPI0003D67D0D related cluster n=1 Tax=unknown RepID=UPI0003D67D0D
Uncharacterized protein {ECO:0000313|EMBL:ETI82447.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_064G1_scaffold_353_19
unknown

Not on your lists

23558..23707
DNA (150bp) protein (50aa)

This feature has no annotations

L2_047_064G1_scaffold_353_20
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24158..25492
DNA (1335bp) protein (445aa)
MFS transporter n=1 Tax=Varibaculum cambriense RepID=UPI0003B2EE47
Uncharacterized protein {ECO:0000313|EMBL:ETI82448.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
major facilitator superfamily protein
L2_047_064G1_scaffold_353_21
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25688..27322
DNA (1635bp) protein (545aa)
UPI0003D68A14 related cluster n=1 Tax=unknown RepID=UPI0003D68A14
Uncharacterized protein {ECO:0000313|EMBL:ETI82449.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
phosphate transporter family protein
L2_047_064G1_scaffold_353_22
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27672..31877
DNA (4206bp) protein (1402aa)
UPI0003D5AB2E related cluster n=1 Tax=unknown RepID=UPI0003D5AB2E
Uncharacterized protein {ECO:0000313|EMBL:ETI82450.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
hypothetical protein
L2_047_064G1_scaffold_353_23
Varibaculum cambriense, Varibaculum, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31880..32071
DNA (192bp) protein (64aa)
UPI0003D5AFBB related cluster n=1 Tax=unknown RepID=UPI0003D5AFBB
Uncharacterized protein {ECO:0000313|EMBL:ETI82451.1}; TaxID=1403948 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Varibaculum.;" source="Varibaculum cambriense DORA_20.;"
Displaying 23 items

View Taxonomy