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L2_047_064G1_scaffold_408

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_064G1_scaffold_408_1
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(108..1304)
DNA (1197bp) protein (399aa)
Glycerate kinase 2 n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SD17_CITFR
Glycerate kinase 2 {ECO:0000313|EMBL:ETX62399.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
glycerate kinase
L2_047_064G1_scaffold_408_2
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1319..2209)
DNA (891bp) protein (297aa)
garR; tartronate semialdehyde reductase (EC:1.1.1.60)
2-hydroxy-3-oxopropionate reductase n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SD18_CITFR
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:ETX62400.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
L2_047_064G1_scaffold_408_3
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2240..3010)
DNA (771bp) protein (257aa)
5-keto-4-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; Short=KDGluc aldolase {ECO:0000256|HAMAP-Rule:MF_01291};; Short=KDGlucA {ECO:0000256|HAMAP-Rule:MF_01291};; EC=4.1.2.20 {ECO:0000256|HAMAP-Rule:MF_01291};; 2-dehydro-3-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; 2-keto-3-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; 5-dehydro-4-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; Alpha-keto-beta-deoxy-D-glucarate aldolase {ECO:0000256|HAMAP-Rule:MF_01291}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
5-keto-4-deoxy-D-glucarate aldolase n=1 Tax=Citrobacter sp. 30_2 RepID=C1M9T2_9ENTR
alpha-dehydro-beta-deoxy-D-glucarate aldolase
L2_047_064G1_scaffold_408_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3026..4360)
DNA (1335bp) protein (445aa)
D-galactonate transporter n=1 Tax=Citrobacter sp. 30_2 RepID=C1M9T3_9ENTR
(D)-galactarate transporter {ECO:0000313|EMBL:ETX62402.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
galactonate transporter
L2_047_064G1_scaffold_408_5
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4766..6337
DNA (1572bp) protein (524aa)
garD; galactarate dehydrogenase (EC:4.2.1.42)
D-galactarate dehydratase n=1 Tax=Citrobacter sp. 30_2 RepID=C1M9T4_9ENTR
D-galactarate dehydratase {ECO:0000313|EMBL:ETX62403.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
L2_047_064G1_scaffold_408_6
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6693..7952
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M9T5_9ENTR
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAL45820.1}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
extracellular solute-binding protein
L2_047_064G1_scaffold_408_7
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8031..8975
DNA (945bp) protein (315aa)
Binding-protein-dependent transport system inner membrane component n=5 Tax=Citrobacter RepID=J0M1L8_9ENTR
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAL45821.1}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
binding-protein-dependent transport system inner membrane protein
L2_047_064G1_scaffold_408_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8985..9809
DNA (825bp) protein (275aa)
Uncharacterized protein n=7 Tax=Citrobacter RepID=C1M9T7_9ENTR
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:KEL78144.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
binding-protein-dependent transport system inner membrane protein
L2_047_064G1_scaffold_408_9
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9821..10927
DNA (1107bp) protein (369aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M9T8_9ENTR
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:GAL45823.1}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
ABC transporter
L2_047_064G1_scaffold_408_10
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10964..12220
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M9T9_9ENTR
Putative oxidoreductase {ECO:0000313|EMBL:GAL45824.1}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
oxidoreductase domain-containing protein
L2_047_064G1_scaffold_408_11
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12239..13159
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M9U0_9ENTR
Sugar kinase {ECO:0000313|EMBL:GAL45825.1}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
ROK family protein
L2_047_064G1_scaffold_408_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13197..13967)
DNA (771bp) protein (257aa)
Uncharacterized protein n=7 Tax=Citrobacter RepID=C1M9U1_9ENTR
DeoR-like helix-turn-helix domain protein {ECO:0000313|EMBL:KEL78140.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
DeoR family transcriptional regulator
L2_047_064G1_scaffold_408_13
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14292..15098)
DNA (807bp) protein (269aa)
DNA-binding transcriptional regulator AgaR n=7 Tax=Citrobacter RepID=J1G5T4_9ENTR
Putative aga operon transcriptional repressor {ECO:0000313|EMBL:GAL45827.1}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
transcriptional regulator
L2_047_064G1_scaffold_408_14
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15348..16643
DNA (1296bp) protein (432aa)
D-tagatose-1,6-bisphosphate aldolase subunit KbaZ n=1 Tax=Citrobacter sp. 30_2 RepID=C1M9U3_9ENTR
D-tagatose-1,6-bisphosphate aldolase subunit KbaZ {ECO:0000256|HAMAP-Rule:MF_01295}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
tagatose-bisphosphate aldolase
L2_047_064G1_scaffold_408_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16663..17136
DNA (474bp) protein (158aa)
PTS system, mannose/fructose/sorbose family, IIB component n=8 Tax=Enterobacteriaceae RepID=C1M9U4_9ENTR
N-acetylgalactosamine-specific PTS system transporter subunit IIB {ECO:0000313|EMBL:ETX67933.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
PTS system N-acetylgalactosamine-specific transporter subunit IIB
L2_047_064G1_scaffold_408_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17147..17926
DNA (780bp) protein (260aa)
Uncharacterized protein n=6 Tax=Citrobacter RepID=C1M9U5_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KDF11419.1}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
PTS system N-acetylgalactosamine-specific transporter subunit IIC
L2_047_064G1_scaffold_408_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17916..18794
DNA (879bp) protein (293aa)
PTS system, mannose/fructose/sorbose family, IID component n=8 Tax=Citrobacter RepID=C1M9U6_9ENTR
PTS system N-acetylgalactosamine-specific transporter subunit IID
PTS system mannose/fructose/sorbose IID component family protein {ECO:0000313|EMBL:KEL78134.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
L2_047_064G1_scaffold_408_18
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18811..19245
DNA (435bp) protein (145aa)
PTS system, mannose/fructose/sorbose family, IIA component n=1 Tax=Citrobacter sp. 30_2 RepID=C1M9U7_9ENTR
Putative N-acetylgalactosamine-specific phosphotransferase system enzyme IIA component AgaF {ECO:0000313|EMBL:GAL45832.1}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
hypothetical protein
L2_047_064G1_scaffold_408_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19242..20375
DNA (1134bp) protein (378aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Citrobacter sp. 30_2 RepID=C1M9U8_9ENTR
N-acetylglucosamine-6-phosphate deacetylase
L2_047_064G1_scaffold_408_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20677..21831
DNA (1155bp) protein (385aa)
Galactosamine-6-phosphate isomerase {ECO:0000313|EMBL:CDL38129.1}; EC=5.3.1.- {ECO:0000313|EMBL:CDL38129.1};; TaxID=1432557 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC11.;"
Putative tagatose-6-phosphate ketose/aldose isomerase n=1 Tax=Citrobacter sp. 30_2 RepID=C1M9U9_9ENTR
aldose isomerase
L2_047_064G1_scaffold_408_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21844..22725
DNA (882bp) protein (294aa)
D-tagatose-1,6-bisphosphate aldolase subunit KbaY {ECO:0000256|HAMAP-Rule:MF_01293}; Short=TBPA {ECO:0000256|HAMAP-Rule:MF_01293};; Short=TagBP aldolase {ECO:0000256|HAMAP-Rule:MF_01293};; EC=4.1.2.40 {ECO:0000256|HAMAP-Rule:MF_01293};; D-tagatose-bisphosphate aldolase class II {ECO:0000256|HAMAP-Rule:MF_01293}; Ketose 1,6-bisphosphate aldolase class II {ECO:0000256|HAMAP-Rule:MF_01293}; Tagatose-bisphosphate aldolase {ECO:0000256|HAMAP-Rule:MF_01293}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
D-tagatose-1,6-bisphosphate aldolase subunit KbaY n=1 Tax=Citrobacter sp. KTE30 RepID=R8UM50_9ENTR
kbaY; tagatose-bisphosphate aldolase
L2_047_064G1_scaffold_408_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22781..23644)
DNA (864bp) protein (288aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
Ribosomal RNA small subunit methyltransferase I n=8 Tax=Citrobacter RepID=C1M9V1_9ENTR
16S rRNA methyltransferase
L2_047_064G1_scaffold_408_23
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23708..25759
DNA (2052bp) protein (684aa)
Penicillin-binding protein activator LpoA n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SD30_CITFR
Penicillin-binding protein activator LpoA {ECO:0000256|HAMAP-Rule:MF_01890}; Short=PBP activator LpoA {ECO:0000256|HAMAP-Rule:MF_01890};; Flags: Precursor;; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
penicillin-binding protein
L2_047_064G1_scaffold_408_24
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25717..26112
DNA (396bp) protein (132aa)
UPF0102 protein CSAG_02948 n=2 Tax=Citrobacter RepID=C1M9V3_9ENTR
UPF0102 protein P834_08567 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
L2_047_064G1_scaffold_408_25
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26147..26737
DNA (591bp) protein (197aa)
DnaA initiator-associating protein DiaA n=12 Tax=Enterobacteriaceae RepID=C1M9V4_9ENTR
DnaA initiator-associating protein DiaA
DnaA initiator-associating protein DiaA {ECO:0000256|HAMAP-Rule:MF_01157, ECO:0000256|SAAS:SAAS00014432}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
L2_047_064G1_scaffold_408_26
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26747..27322
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M9V5_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:ETX62416.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
membrane protein
L2_047_064G1_scaffold_408_27
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27407..28042)
DNA (636bp) protein (212aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=C1M9V6_9ENTR
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ETX62417.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
hypothetical protein
Displaying 27 items

View Taxonomy