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L2_047_362G1_scaffold_333

Search features with annotation key words

Displaying items 1-30 of 67 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_362G1_scaffold_333_1
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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144..371
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NQF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01757.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L2_047_362G1_scaffold_333_2
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists


398..2962
DNA (2565bp) protein (855aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YII1_9FIRM
L2_047_362G1_scaffold_333_3
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

2996..3454
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZK50_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL15020.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
conserved hypothetical protein
L2_047_362G1_scaffold_333_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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3738..4175
DNA (438bp) protein (146aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rnhA; ribonuclease H (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGH6_9FIRM
L2_047_362G1_scaffold_333_5
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists


4714..6135
DNA (1422bp) protein (474aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
glyQS; glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XY07_9FIRM
L2_047_362G1_scaffold_333_6
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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6484..6840
DNA (357bp) protein (119aa)
DNA-binding helix-turn-helix protein n=2 Tax=Oscillibacter RepID=U2PZX6_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERK64766.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
Helix-turn-helix.
L2_047_362G1_scaffold_333_7
unknown

Not on your lists

comp(6895..7524)
DNA (630bp) protein (210aa)

This feature has no annotations

L2_047_362G1_scaffold_333_8
unknown

Not on your lists

comp(7630..7896)
DNA (267bp) protein (89aa)

This feature has no annotations

L2_047_362G1_scaffold_333_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8291..10120
DNA (1830bp) protein (610aa)
GTP-binding protein TypA/BipA n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RUQ1_9FIRM
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:EQN60287.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
typA; GTP-binding protein TypA
L2_047_362G1_scaffold_333_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10356..10970)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45815.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_047_362G1_scaffold_333_11
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

11222..11572
DNA (351bp) protein (117aa)
Transcriptional regulator PadR family n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AIY8_9FIRM
Transcriptional regulator PadR family {ECO:0000313|EMBL:CCX39336.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
PadR-like family transcriptional regulator
L2_047_362G1_scaffold_333_12
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11632..12429
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIP7_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX43910.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L2_047_362G1_scaffold_333_13
unknown

Not on your lists

12426..13181
DNA (756bp) protein (252aa)

This feature has no annotations

L2_047_362G1_scaffold_333_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13831..14145
DNA (315bp) protein (105aa)
30S ribosomal protein S10 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGX6_9FIRM
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rpsJ; 30S ribosomal protein S10
L2_047_362G1_scaffold_333_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14329..15054
DNA (726bp) protein (242aa)
50S ribosomal protein L3 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGX5_9FIRM
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rplC; 50S ribosomal protein L3
L2_047_362G1_scaffold_333_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15074..15694
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGX4_9FIRM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rplD; 50S ribosomal protein L4
L2_047_362G1_scaffold_333_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15694..15987
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGX3_9FIRM
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_047_362G1_scaffold_333_18
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists


16003..16836
DNA (834bp) protein (278aa)
50S ribosomal protein L2 n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZJQ3_9FIRM
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
rplB; 50S ribosomal protein L2
L2_047_362G1_scaffold_333_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


16851..17123
DNA (273bp) protein (91aa)
30S ribosomal protein S19 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGX1_9FIRM
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
SSU ribosomal protein S19P
L2_047_362G1_scaffold_333_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


17138..17470
DNA (333bp) protein (111aa)
50S ribosomal protein L22 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGX0_9FIRM
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rplV; 50S ribosomal protein L22
L2_047_362G1_scaffold_333_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


17486..18322
DNA (837bp) protein (279aa)
30S ribosomal protein S3 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGW9_9FIRM
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rpsC; 30S ribosomal protein S3
L2_047_362G1_scaffold_333_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


18322..18753
DNA (432bp) protein (144aa)
50S ribosomal protein L16 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGW8_9FIRM
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rplP; 50S ribosomal protein L16
L2_047_362G1_scaffold_333_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


18753..18950
DNA (198bp) protein (66aa)
50S ribosomal protein L29 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGW7_9FIRM
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_047_362G1_scaffold_333_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


18966..19226
DNA (261bp) protein (87aa)
30S ribosomal protein S17 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGW6_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rpsQ; 30S ribosomal protein S17
L2_047_362G1_scaffold_333_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19239..19607
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGW5_9FIRM
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rplN; 50S ribosomal protein L14
L2_047_362G1_scaffold_333_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19623..19937
DNA (315bp) protein (105aa)
50S ribosomal protein L24 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGW4_9FIRM
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
LSU ribosomal protein L24P
L2_047_362G1_scaffold_333_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


19958..20509
DNA (552bp) protein (184aa)
50S ribosomal protein L5 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGW3_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rplE; 50S ribosomal protein L5
L2_047_362G1_scaffold_333_28
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists


20525..20710
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZJP4_9FIRM
30S ribosomal protein S14 type Z {ECO:0000256|HAMAP-Rule:MF_01364}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
rpsN; 30S ribosomal protein S14p/S29e
L2_047_362G1_scaffold_333_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


21165..21563
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGW1_9FIRM
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rpsH; 30S ribosomal protein S8
L2_047_362G1_scaffold_333_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


21578..22123
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XGW0_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
LSU ribosomal protein L6P
Displaying items 1-30 of 67 in total

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