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L2_047_362G1_scaffold_338

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_362G1_scaffold_338_1
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..2295)
DNA (2295bp) protein (765aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A215_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX36848.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
S-layer domain-containing protein
L2_047_362G1_scaffold_338_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2633..3448)
DNA (816bp) protein (272aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE96_9FIRM
L2_047_362G1_scaffold_338_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3561..4424)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46395.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_047_362G1_scaffold_338_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4430..5740)
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46394.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_047_362G1_scaffold_338_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5733..7511)
DNA (1779bp) protein (593aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
two-component histidine kinase (EC:2.7.13.3)
Two-component system, OmpR family, sensor histidine kinase VicK n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE93_9FIRM
L2_047_362G1_scaffold_338_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7601..8320)
DNA (720bp) protein (240aa)
Two-component system, OmpR family, response regulator VicR n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE92_9FIRM
Two-component system, OmpR family, response regulator VicR {ECO:0000313|EMBL:EGJ46392.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
OmpR family two-component response regulator
L2_047_362G1_scaffold_338_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8336..8872)
DNA (537bp) protein (179aa)
NTP pyrophosphohydrolases including oxidative damage repair enzymes (EC:3.6.1.13)
ADP-ribose pyrophosphatase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE91_9FIRM
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:EGJ46391.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_047_362G1_scaffold_338_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9246..9557
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46701.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_047_362G1_scaffold_338_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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10023..11570
DNA (1548bp) protein (516aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD04_9FIRM
putative isomerase
L2_047_362G1_scaffold_338_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11695..12543)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9F4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48201.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_047_362G1_scaffold_338_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12748..13293
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9F6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48203.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_047_362G1_scaffold_338_12
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13290..13757
DNA (468bp) protein (156aa)
Predicted flavin-nucleotide-binding protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LBF7_RUMC1
Predicted flavin-nucleotide-binding protein
Predicted flavin-nucleotide-binding protein {ECO:0000313|EMBL:CBL16952.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L2_047_362G1_scaffold_338_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13956..14321
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG8_9FIRM
UPF0122 protein HMPREF0866_00286 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_047_362G1_scaffold_338_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


14325..15701
DNA (1377bp) protein (459aa)
Signal recognition particle protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG7_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ffh; signal recognition particle protein
L2_047_362G1_scaffold_338_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15804..16043
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG6_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rpsP; 30S ribosomal protein S16
L2_047_362G1_scaffold_338_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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16062..16292
DNA (231bp) protein (77aa)
UPF0109 protein HMPREF0866_00283 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG5_9FIRM
UPF0109 protein HMPREF0866_00283 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_047_362G1_scaffold_338_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16380..16877
DNA (498bp) protein (166aa)
Ribosome maturation factor RimM n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XAG4_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
rimM; Ribosome maturation factor RimM
L2_047_362G1_scaffold_338_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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16992..17360
DNA (369bp) protein (123aa)
Desulfoferrodoxin n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RYZ2_9FIRM
Desulfoferrodoxin {ECO:0000313|EMBL:EQN60559.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
desulfoferrodoxin ferrous iron-binding domain
L2_047_362G1_scaffold_338_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17609..18931
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48153.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Na+/H+ antiporter
L2_047_362G1_scaffold_338_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18967..20373
DNA (1407bp) protein (469aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47773.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative surface layer protein
L2_047_362G1_scaffold_338_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20453..21331)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC96_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48130.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
radical SAM protein
L2_047_362G1_scaffold_338_22
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(21395..21592)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YCM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13352.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L2_047_362G1_scaffold_338_23
Ethanoligenens harbinense, Ethanoligenens, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21573..21851)
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U5R6_ETHHY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU26825.1}; TaxID=663278 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ethanoligenens.;" source="Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033; / YUAN-3).;"
L2_047_362G1_scaffold_338_24
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21855..22544)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC98_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48132.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
two component transcriptional regulator
L2_047_362G1_scaffold_338_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22649..23911)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48133.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_047_362G1_scaffold_338_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23930..24586)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48134.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_047_362G1_scaffold_338_27
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24602..25006)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FJJ7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMS72315.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
hypothetical protein
L2_047_362G1_scaffold_338_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25036..25689)
DNA (654bp) protein (218aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA1_9FIRM
L2_047_362G1_scaffold_338_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25945..27198
DNA (1254bp) protein (418aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
glyA; Serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA2_9FIRM
L2_047_362G1_scaffold_338_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27499..29190
DNA (1692bp) protein (564aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XCA3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48137.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative drug efflux protein
Displaying items 1-30 of 48 in total

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