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L2_047_362G1_scaffold_722

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_047_362G1_scaffold_722_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..127
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46918.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_047_362G1_scaffold_722_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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442..2190
DNA (1749bp) protein (583aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDM3_9FIRM
L2_047_362G1_scaffold_722_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2312..2644
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46920.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_047_362G1_scaffold_722_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2646..3269
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46921.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative hydrolase
L2_047_362G1_scaffold_722_5
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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3266..3925
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XW58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13904.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
putative methyltransferase
L2_047_362G1_scaffold_722_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3964..4803
DNA (840bp) protein (280aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDM7_9FIRM
putative methyltransferase
L2_047_362G1_scaffold_722_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4953..5216)
DNA (264bp) protein (88aa)
Transition state regulatory protein AbrB n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9N9_9FIRM
Transition state regulatory protein AbrB {ECO:0000313|EMBL:EGJ48365.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
AbrB family transcriptional regulator
L2_047_362G1_scaffold_722_8
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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5547..6119
DNA (573bp) protein (191aa)
Putative spore maturation protein A n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YUL9_9FIRM
Putative spore maturation protein A {ECO:0000313|EMBL:EHM42013.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
spmA; spore maturation protein A
L2_047_362G1_scaffold_722_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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6122..6646
DNA (525bp) protein (175aa)
Spore maturation protein B n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9N7_9FIRM
Spore maturation protein B {ECO:0000313|EMBL:EGJ48363.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
spmB; spore maturation protein B
L2_047_362G1_scaffold_722_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6648..7979)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9N6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48362.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Predicted membrane protein
L2_047_362G1_scaffold_722_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8013..9158)
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9N5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48361.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Alanyl-tRNA synthetase
L2_047_362G1_scaffold_722_12
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9295..9540
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6DEH6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA76237.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
Phosphotransferase System HPr (HPr) Family
L2_047_362G1_scaffold_722_13
Oscillibacter sp. 1-3, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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9591..11303
DNA (1713bp) protein (571aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1235797 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. 1-3.;"
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Oscillibacter sp. 1-3 RepID=R9MA26_9FIRM
PtsA; phosphoenolpyruvate-protein kinase
L2_047_362G1_scaffold_722_14
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11375..12187)
DNA (813bp) protein (271aa)
RNA methyltransferase, TrmH family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P1M8_9FIRM
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:EDM97920.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
rRNA methylases
L2_047_362G1_scaffold_722_15
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(12209..13423)
DNA (1215bp) protein (405aa)
Peptidase propeptide and YPEB domain protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CXN9_9FIRM
Peptidase propeptide and YPEB domain protein {ECO:0000313|EMBL:CCX72653.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
hypothetical protein
L2_047_362G1_scaffold_722_16
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

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comp(13420..13995)
DNA (576bp) protein (192aa)
RNA polymerase sigma factor n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5S5A2_9FIRM
RNA polymerase sigma factor {ECO:0000313|EMBL:CCZ45994.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
RNA polymerase sigma factor, sigma-70 family
L2_047_362G1_scaffold_722_17
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14179..15759)
DNA (1581bp) protein (527aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5ILF0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI57219.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
exoenzyme regulatory protein AepA
L2_047_362G1_scaffold_722_18
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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15992..16738
DNA (747bp) protein (249aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.100 1.1.1.159)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) {ECO:0000313|EMBL:CBL40507.1}; EC=1.1.1.100 {ECO:0000313|EMBL:CBL40507.1};; EC=1.1.1.159 {ECO:0000313|EMBL:CBL40507.1};; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GRT2_9FIRM
L2_047_362G1_scaffold_722_19
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16850..17509)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YQH0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38228.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
putative transcriptional regulator
L2_047_362G1_scaffold_722_20
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17691..18014
DNA (324bp) protein (108aa)
Thioredoxin n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LH02_9FIRM
Thioredoxin domain-containing protein
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L2_047_362G1_scaffold_722_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18031..18960
DNA (930bp) protein (310aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin reductase n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZNG4_9FIRM
L2_047_362G1_scaffold_722_22
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18962..19168
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7B510_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL40496.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L2_047_362G1_scaffold_722_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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19156..19818
DNA (663bp) protein (221aa)
Cytochrome C biogenesis protein transmembrane region n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIS8_9FIRM
Cytochrome C biogenesis protein transmembrane region {ECO:0000313|EMBL:EFB77437.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ccdA; cytochrome c biogenesis protein CcdA
L2_047_362G1_scaffold_722_24
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19829..20410
DNA (582bp) protein (194aa)
Antioxidant AhpC/TSA family n=1 Tax=Clostridium sp. CAG:43 RepID=R7B642_9CLOT
Antioxidant AhpC/TSA family {ECO:0000313|EMBL:CDD59166.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
hypothetical protein
L2_047_362G1_scaffold_722_25
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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21161..21397
DNA (237bp) protein (79aa)
Tetratricopeptide repeat protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NUL8_9FIRM
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EDN00069.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L2_047_362G1_scaffold_722_26
Fusobacterium periodonticum, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

21411..21938
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Fusobacterium periodonticum 2_1_31 RepID=C3WIR3_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:KGE63488.1}; TaxID=469599 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium periodonticum 2_1_31.;"
hypothetical protein
L2_047_362G1_scaffold_722_27
Eubacterium brachy, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21953..22321
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Eubacterium brachy ATCC 33089 RepID=V1CGR5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESE30498.1}; TaxID=1321814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium brachy ATCC 33089.;"
hypothetical protein
L2_047_362G1_scaffold_722_28
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23072..23710)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YNX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM53124.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L2_047_362G1_scaffold_722_29
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23729..24013)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YNW5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM53115.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L2_047_362G1_scaffold_722_30
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24115..25131)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YNW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM53113.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
Displaying 30 items

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