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L2_057_000G1_scaffold_305

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000G1_scaffold_305_1
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(321..1397)
DNA (1077bp) protein (359aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z8C6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35130.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L2_057_000G1_scaffold_305_2
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1348..1866)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZEY5_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA35129.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
RNA polymerase sigma factor, sigma-70 family
L2_057_000G1_scaffold_305_3
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2115..6593)
DNA (4479bp) protein (1493aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Collinsella sp. CAG:166 RepID=R5Z5X4_9ACTN
L2_057_000G1_scaffold_305_4
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6600..10091)
DNA (3492bp) protein (1164aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Collinsella sp. CAG:166 RepID=R6A1S7_9ACTN
L2_057_000G1_scaffold_305_5
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10600..11592)
DNA (993bp) protein (331aa)
Nucleotidyl transferase n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZLJ2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74754.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
nucleotidyl transferase
L2_057_000G1_scaffold_305_6
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11818..12195)
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=2 Tax=Collinsella RepID=A4E9G7_9ACTN
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
50S ribosomal protein L12
L2_057_000G1_scaffold_305_7
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(12298..12819)
DNA (522bp) protein (174aa)
50S ribosomal protein L10 n=2 Tax=Collinsella RepID=A4E9G6_9ACTN
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
50S ribosomal protein L10P
L2_057_000G1_scaffold_305_8
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(13326..14462)
DNA (1137bp) protein (379aa)
Putative aminotransferase A n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9G5_9ACTN
Putative aminotransferase A {ECO:0000313|EMBL:EBA39910.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
aspartate/tyrosine/aromatic aminotransferase
L2_057_000G1_scaffold_305_9
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

14556..15212
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A1S3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74758.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
hypothetical protein
L2_057_000G1_scaffold_305_10
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15209..15778)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZLI9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74759.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
G:T/U mismatch-specific DNA glycosylase
L2_057_000G1_scaffold_305_11
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15782..17158)
DNA (1377bp) protein (459aa)
Alpha-amylase {ECO:0000256|RuleBase:RU361134}; EC=3.2.1.1 {ECO:0000256|RuleBase:RU361134};; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Alpha amylase, catalytic domain protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9G2_9ACTN
Glycosidases
L2_057_000G1_scaffold_305_12
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17312..18508)
DNA (1197bp) protein (399aa)
Transporter, major facilitator family protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9G1_9ACTN
Transporter, major facilitator family protein {ECO:0000313|EMBL:EBA39906.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Arabinose efflux permease
L2_057_000G1_scaffold_305_13
unknown

Not on your lists

comp(18684..19436)
DNA (753bp) protein (251aa)

This feature has no annotations

L2_057_000G1_scaffold_305_14
Coriobacterium glomerans, Coriobacterium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(19602..20975)
DNA (1374bp) protein (458aa)
Glycoside hydrolase family 4 n=1 Tax=Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 / PW2) RepID=F2N8A5_CORGP
glycoside hydrolase family protein
Glycoside hydrolase family 4 {ECO:0000313|EMBL:AEB07288.1}; TaxID=700015 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Coriobacterium.;" source="Coriobacterium glomerans (strain ATCC 49209 / DSM 20642 / JCM 10262 /; PW2).;"
L2_057_000G1_scaffold_305_15
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21151..21903
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VZR4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ38210.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
RpiR family transcriptional regulator
L2_057_000G1_scaffold_305_16
Atopobium vaginae, Atopobium, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(21966..23630)
DNA (1665bp) protein (555aa)
PTS system, glucose-like IIB component {ECO:0000313|EMBL:EFL44518.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EFL44518.1};; TaxID=866774 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Atopobium.;" source="Atopobium vaginae PB189-T1-4.;"
PTS system, glucose-like IIB component n=1 Tax=Atopobium vaginae PB189-T1-4 RepID=E1L0Z4_9ACTN
PTS system glucose-like transporter subunit IIB
L2_057_000G1_scaffold_305_17
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23945..26392)
DNA (2448bp) protein (816aa)
Ferrous iron transport protein B n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZBY5_9ACTN
Ferrous iron transporter B {ECO:0000313|EMBL:KGI74762.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
ferrous iron transport protein B
L2_057_000G1_scaffold_305_18
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(26778..27677)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F9_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:KGI74763.1}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
putative esterase
L2_057_000G1_scaffold_305_19
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

27921..28484
DNA (564bp) protein (188aa)
PTS system, glucose subfamily, IIA component n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F8_9ACTN
PTS system, glucose subfamily, IIA component {ECO:0000313|EMBL:EBA39903.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
PTS system glucose subfamily transporter subunit IIA
L2_057_000G1_scaffold_305_20
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

28654..30069
DNA (1416bp) protein (472aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F7_9ACTN
L2_057_000G1_scaffold_305_21
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

30328..31113
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZIF2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:CDA36394.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
L2_057_000G1_scaffold_305_22
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

31274..32254
DNA (981bp) protein (327aa)
ABC transporter substrate binding protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZBZ1_9ACTN
ABC transporter substrate binding protein {ECO:0000313|EMBL:CDA36395.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
hypothetical protein
L2_057_000G1_scaffold_305_23
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

32458..33381
DNA (924bp) protein (308aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F4_9ACTN
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EBA39899.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
inner-membrane translocator
L2_057_000G1_scaffold_305_24
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

33374..34168
DNA (795bp) protein (265aa)
ABC transporter ATP-binding protein n=1 Tax=Collinsella sp. CAG:166 RepID=R6A5J8_9ACTN
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDA36397.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
ABC transporter
L2_057_000G1_scaffold_305_25
Collinsella sp. CAG:166, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

34505..35272
DNA (768bp) protein (256aa)
Transporter small conductance mechanosensitive ion channel MscS family protein n=1 Tax=Collinsella sp. CAG:166 RepID=R5ZIF7_9ACTN
Transporter small conductance mechanosensitive ion channel MscS family protein {ECO:0000313|EMBL:CDA36399.1}; TaxID=1262850 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples.;" source="Collinsella sp. CAG:166.;"
small-conductance mechanosensitive channel
L2_057_000G1_scaffold_305_26
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

35365..37281
DNA (1917bp) protein (639aa)
Basic membrane protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9F0_9ACTN
Basic membrane protein {ECO:0000313|EMBL:EBA39895.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
basic membrane lipoprotein
L2_057_000G1_scaffold_305_27
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

37278..37988
DNA (711bp) protein (237aa)
Ser/Thr phosphatase family protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E9E9_9ACTN
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EBA39894.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Predicted phosphoesterases, related to the Icc protein
L2_057_000G1_scaffold_305_28
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(38114..38821)
DNA (708bp) protein (236aa)
50S ribosomal protein L1 n=2 Tax=Collinsella RepID=A4E9E8_9ACTN
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
50S ribosomal protein L1
L2_057_000G1_scaffold_305_29
Collinsella sp. 4_8_47FAA, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists


comp(38939..39367)
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=2 Tax=Collinsella RepID=A4E9E7_9ACTN
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=742722 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella sp. 4_8_47FAA.;"
50S ribosomal protein L11
L2_057_000G1_scaffold_305_30
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(39488..40024)
DNA (537bp) protein (179aa)
Transcription termination/antitermination protein NusG n=2 Tax=Collinsella RepID=A4E9E6_9ACTN
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
transcription antitermination protein nusG
Displaying items 1-30 of 49 in total

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