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L2_057_000G1_scaffold_342

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000G1_scaffold_342_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..867)
DNA (867bp) protein (289aa)
aspS; Aspartyl-tRNA synthetase (Aspartate--tRNAligase) (AspRS) (EC:6.1.1.12)
Aspartate--tRNA ligase {ECO:0000313|EMBL:EQG74160.1}; EC=6.1.1.- {ECO:0000313|EMBL:EQG74160.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Aspartate--tRNA ligase n=6 Tax=Clostridium difficile RepID=T3THE8_CLODI
L2_057_000G1_scaffold_342_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(941..2203)
DNA (1263bp) protein (421aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
Histidine--tRNA ligase n=166 Tax=Clostridium difficile RepID=SYH_CLOD6
hisS; histidyl-tRNA synthetase
L2_057_000G1_scaffold_342_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2193..3749)
DNA (1557bp) protein (519aa)
Coproporphyrinogen III oxidase {ECO:0000313|EMBL:CDS95894.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CDS95894.1};; Oxygen-independent coproporphyrinogen-III oxidase 2 {ECO:0000313|EMBL:CDS89034.1}; EC=1.3.99.22 {ECO:0000313|EMBL:CDS89034.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hemZ; Coproporphyrinogen III oxidase (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase HemZ n=3 Tax=Clostridium difficile RepID=T4PGK6_CLODI
L2_057_000G1_scaffold_342_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3840..4454)
DNA (615bp) protein (205aa)
Metallo-beta-lactamase superfamily protein n=157 Tax=Clostridium difficile RepID=T3G9Z5_CLODC
hydrolase beta-lactamase-like
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:EQE60388.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_057_000G1_scaffold_342_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4469..4918)
DNA (450bp) protein (150aa)
dtd; D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
D-tyrosyl-tRNA(Tyr) deacylase n=190 Tax=Clostridium difficile RepID=DTD_CLOD6
L2_057_000G1_scaffold_342_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4943..7150)
DNA (2208bp) protein (736aa)
GTP pyrophosphokinase (RelA/SpoT) {ECO:0000313|EMBL:CCK99237.1}; EC=2.7.6.5 {ECO:0000313|EMBL:CCK99237.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
GTP pyrophosphokinase (RelA/SpoT) n=201 Tax=Clostridium difficile RepID=Q183H8_CLOD6
GTP pyrophosphokinase
L2_057_000G1_scaffold_342_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7224..7736)
DNA (513bp) protein (171aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Adenine phosphoribosyltransferase n=212 Tax=Clostridium difficile RepID=APT_CLOD6
apt; adenine phosphoribosyltransferase
L2_057_000G1_scaffold_342_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7749..10199)
DNA (2451bp) protein (817aa)
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:EQG74135.1}; EC=3.1.-.- {ECO:0000313|EMBL:EQG74135.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Single-stranded-DNA-specific exonuclease RecJ n=75 Tax=Clostridium difficile RepID=G6BTK2_CLODI
recJ; single-stranded-DNA-specific exonuclease
L2_057_000G1_scaffold_342_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10212..11876)
DNA (1665bp) protein (555aa)
ABC1 family protein n=2 Tax=Clostridium difficile RepID=T4PAG7_CLODI
Putative ubiquinone biosynthesis protein {ECO:0000313|EMBL:CCL31018.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
ubiquinone biosynthesis protein
L2_057_000G1_scaffold_342_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12174..12671)
DNA (498bp) protein (166aa)
Bacterial transferase hexapeptide family protein n=197 Tax=Clostridium difficile RepID=C9XNB9_CLODC
transferase
Bacterial transferase hexapeptide family protein {ECO:0000313|EMBL:EQE60353.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_057_000G1_scaffold_342_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12700..14079)
DNA (1380bp) protein (460aa)
Six-Cys-in-45 modification radical SAM protein n=136 Tax=Clostridium difficile RepID=G6B4H5_CLODI
radical SAM protein
Putative radical SAM-family protein {ECO:0000313|EMBL:CCL31020.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_057_000G1_scaffold_342_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14384..14530)
DNA (147bp) protein (49aa)
Autoinducer prepeptide n=77 Tax=Clostridium difficile RepID=C9XNC1_CLODC
autoinducer prepeptide
Autoinducer prepeptide {ECO:0000313|EMBL:CCL31021.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_057_000G1_scaffold_342_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14560..15138)
DNA (579bp) protein (193aa)
Accessory gene regulator n=168 Tax=Clostridium difficile RepID=Q183I4_CLOD6
agrB; accessory gene regulator
Accessory transciptional regulator B family protein {ECO:0000313|EMBL:EQE60333.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_057_000G1_scaffold_342_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15506..16936)
DNA (1431bp) protein (477aa)
Uncharacterized protein n=150 Tax=Clostridium difficile RepID=Q183I8_CLOD6
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE60357.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_057_000G1_scaffold_342_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17280..17951
DNA (672bp) protein (224aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PAH2_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL23116.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L2_057_000G1_scaffold_342_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18457..21159)
DNA (2703bp) protein (901aa)
Diguanylate cyclase domain protein n=2 Tax=Clostridium difficile RepID=T4PGD2_CLODI
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQG74509.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
putative signaling protein
L2_057_000G1_scaffold_342_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21185..22735)
DNA (1551bp) protein (517aa)
putative diguanylate kinase signaling protein (EC:2.7.7.65)
Diguanylate cyclase domain protein n=130 Tax=Clostridium difficile RepID=T3G9E5_CLODC
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQG74567.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_057_000G1_scaffold_342_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23058..24770)
DNA (1713bp) protein (571aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
ptsI; phosphoenolpyruvate-protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=122 Tax=Clostridium difficile RepID=T3GAH1_CLODC
L2_057_000G1_scaffold_342_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25123..25383)
DNA (261bp) protein (87aa)
Histidine-containing phosphocarrier protein of the phosphotransferase system (PTS) (HPr protein) {ECO:0000313|EMBL:CDS89062.1}; PTS system%2C phosphocarrier protein {ECO:0000313|EMBL:CKH86143.1}; EC=2.7.11.- {ECO:0000313|EMBL:CKH86143.1};; PTS system, HPr protein {ECO:0000313|EMBL:CEJ99384.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
PTS system, phosphocarrier protein n=220 Tax=Clostridium difficile RepID=C9XP60_CLODC
ptsH; PTS system, phosphocarrier protein
L2_057_000G1_scaffold_342_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25576..26787)
DNA (1212bp) protein (404aa)
Patatin-like phospholipase family protein n=136 Tax=Clostridium difficile RepID=C9XP61_CLODC
phospholipase
Patatin-like phospholipase family protein {ECO:0000313|EMBL:EQE60241.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_057_000G1_scaffold_342_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27019..28752)
DNA (1734bp) protein (578aa)
putative N6 adenine-specific DNAmethyltransferase, N12 class (EC:2.1.1.72)
Eco57I restriction endonuclease n=155 Tax=Clostridium difficile RepID=G6BF72_CLODI
Eco57I restriction-modification methylase family protein {ECO:0000313|EMBL:EQG74156.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L2_057_000G1_scaffold_342_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28792..29190)
DNA (399bp) protein (133aa)
Transcriptional regulator family protein n=207 Tax=Clostridium difficile RepID=C9XP63_CLODC
hypothetical protein
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:CCL31030.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L2_057_000G1_scaffold_342_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29193..30740)
DNA (1548bp) protein (516aa)
Diguanylate cyclase domain protein n=14 Tax=Clostridium difficile RepID=T2UN59_CLODI
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQI79217.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
putative signaling protein
L2_057_000G1_scaffold_342_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31055..31879)
DNA (825bp) protein (275aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase family protein n=118 Tax=Clostridium difficile RepID=T3GBZ1_CLODC
N-acetylmuramoyl-L-alanine amidase family protein {ECO:0000313|EMBL:EQE60314.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_057_000G1_scaffold_342_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32003..32647)
DNA (645bp) protein (215aa)
Putative undecaprenyl pyrophosphate synthetase {ECO:0000313|EMBL:CCK99255.1}; EC=2.5.1.31 {ECO:0000313|EMBL:CCK99255.1};; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Undecaprenyl pyrophosphate synthetase n=205 Tax=Clostridium difficile RepID=C9XP66_CLODC
UDP pyrophosphate synthetase
L2_057_000G1_scaffold_342_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32786..33256
DNA (471bp) protein (157aa)
Uncharacterized protein n=205 Tax=Clostridium difficile RepID=T2TAN8_CLODI
lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:EQE60286.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L2_057_000G1_scaffold_342_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33379..34167)
DNA (789bp) protein (263aa)
Putative hydrolase, HAD superfamily, IIB subfamily {ECO:0000313|EMBL:CCL23128.1}; EC=3.1.3.- {ECO:0000313|EMBL:CCL23128.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
HAD hydrolase, IIB family protein n=2 Tax=Clostridium difficile RepID=T4PGA4_CLODI
hydrolase
L2_057_000G1_scaffold_342_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34535..35491
DNA (957bp) protein (319aa)
Cell envelope-related function transcriptional attenuator common domain protein n=131 Tax=Clostridium difficile RepID=T3GEB3_CLODC
Cell envelope-related function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EQE60226.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
penicillin-binding protein repressor
L2_057_000G1_scaffold_342_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35776..36741
DNA (966bp) protein (322aa)
Transcriptional regulator, LytR family n=78 Tax=Clostridium difficile RepID=Q183K3_CLOD6
penicillin-binding protein repressor
Transcriptional regulator, LytR family {ECO:0000313|EMBL:CAJ69654.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L2_057_000G1_scaffold_342_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36939..39050)
DNA (2112bp) protein (704aa)
Melibiase family protein n=132 Tax=Clostridium difficile RepID=T3GA68_CLODC
Cell surface protein cwp19 {ECO:0000313|EMBL:CAJ69655.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
cwp19; Cell surface protein cwp19
Displaying items 1-30 of 49 in total

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