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L2_057_000G1_scaffold_415

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000G1_scaffold_415_1
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(353..856)
DNA (504bp) protein (168aa)
Universal stress family protein n=2 Tax=Staphylococcus RepID=H3W082_STAEP
Universal stress protein family
Universal stress family protein {ECO:0000313|EMBL:EFE59836.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_057_000G1_scaffold_415_2
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

1001..2116
DNA (1116bp) protein (372aa)
Alanine dehydrogenase (EC:1.4.1.1)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Alanine dehydrogenase n=50 Tax=Staphylococcus epidermidis RepID=DHA_STAEQ
L2_057_000G1_scaffold_415_3
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(2180..3235)
DNA (1056bp) protein (352aa)
Proline dipeptidase (EC:3.4.13.9)
Creatinase {ECO:0000313|EMBL:EFE59838.1}; EC=3.4.13.9 {ECO:0000313|EMBL:EFE59838.1};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Uncharacterized peptidase SERP1271 n=45 Tax=Staphylococcus epidermidis RepID=Y1271_STAEQ
L2_057_000G1_scaffold_415_4
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

3407..4096
DNA (690bp) protein (230aa)
UPF0173 metal-dependent hydrolase SERP1270 n=48 Tax=Staphylococcus epidermidis RepID=Y1270_STAEQ
FIG002379: metal-dependent hydrolase
UPF0173 metal-dependent hydrolase SE_1382 {ECO:0000255|HAMAP-Rule:MF_00457}; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
L2_057_000G1_scaffold_415_5

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comp(4397..4810)
DNA (414bp) protein (138aa)
Universal stress protein family n=49 Tax=Staphylococcus epidermidis RepID=Q5HNJ9_STAEQ
Universal stress protein family
Universal stress family protein {ECO:0000313|EMBL:ETJ18947.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_057_000G1_scaffold_415_6
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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5008..6306
DNA (1299bp) protein (433aa)
CBS domain protein n=47 Tax=Staphylococcus epidermidis RepID=Q5HNK0_STAEQ
FIG009439: Cytosolic protein containing multiple CBS domains
CBS domain protein {ECO:0000313|EMBL:AAW54656.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L2_057_000G1_scaffold_415_7

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6340..7278
DNA (939bp) protein (313aa)
DHHA1 domain protein n=4 Tax=Staphylococcus epidermidis RepID=C5Q9V4_STAEP
DHH family phosphoesterase {ECO:0000313|EMBL:ETJ18949.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L2_057_000G1_scaffold_415_8
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

7302..10499
DNA (3198bp) protein (1066aa)
DNA polymerase III subunit alpha; EC=2.7.7.7;; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
DNA polymerase III alpha subunit (EC:2.7.7.7)
DNA polymerase III, alpha subunit n=4 Tax=Staphylococcus epidermidis RepID=C5Q9V3_STAEP
L2_057_000G1_scaffold_415_9
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

10803..12032
DNA (1230bp) protein (410aa)
NADP-dependent malic enzyme (EC:1.1.1.40)
Malic enzyme, NAD binding domain protein n=12 Tax=Staphylococcus epidermidis RepID=C5Q9V2_STAEP
NADP-dependent malic enzyme, putative {ECO:0000313|EMBL:AAW54653.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L2_057_000G1_scaffold_415_10
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

12131..12988
DNA (858bp) protein (286aa)
accD; acetyl-CoA carboxylase subunit beta (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000255|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000255|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000255|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000255|HAMAP-Rule:MF_01395};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=16 Tax=Staphylococcus epidermidis RepID=ACCD_STAEQ
L2_057_000G1_scaffold_415_11
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

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12988..13932
DNA (945bp) protein (315aa)
Acetyl-coenzyme A carboxyl transferase alpha chain (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823}; Short=ACCase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000255|HAMAP-Rule:MF_00823};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=22 Tax=Staphylococcus epidermidis RepID=ACCA_STAEQ
L2_057_000G1_scaffold_415_12
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

14110..15078
DNA (969bp) protein (323aa)
pfkA; 6-phosphofructokinase (EC:2.7.1.11)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
6-phosphofructokinase n=42 Tax=Staphylococcaceae RepID=K6PF_STAES
L2_057_000G1_scaffold_415_13
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

15102..16859
DNA (1758bp) protein (586aa)
Pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase; Short=PK;; EC=2.7.1.40;; TaxID=176280 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 12228).;"
Pyruvate kinase n=48 Tax=Staphylococcus epidermidis RepID=KPYK_STAEQ
L2_057_000G1_scaffold_415_14
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17302..18660)
DNA (1359bp) protein (453aa)
D-serine/D-alanine/glycine transporter n=38 Tax=Staphylococcus epidermidis RepID=Q8CNX2_STAES
D-serine/D-alanine/glycine transporter
Amino acid permease {ECO:0000313|EMBL:EFE59849.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_057_000G1_scaffold_415_15
Staphylococcus sp. DORA_6_22, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19008..20129
DNA (1122bp) protein (374aa)
Citrate synthase n=5 Tax=Staphylococcus epidermidis RepID=C5Q9U6_STAEP
citZ; citrate synthase II
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=1403935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus sp. DORA_6_22.;"
L2_057_000G1_scaffold_415_16
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

20172..21440
DNA (1269bp) protein (423aa)
Isocitrate dehydrogenase [NADP] (EC:1.1.1.42)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Isocitrate dehydrogenase [NADP] n=6 Tax=Staphylococcus epidermidis RepID=C5Q9U5_STAEP
L2_057_000G1_scaffold_415_17
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21756..22466
DNA (711bp) protein (237aa)
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=76 Tax=Staphylococcus epidermidis RepID=Q5HNL2_STAEQ
Alkaline phosphatase synthesis transcriptional regulatory protein
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP {ECO:0000313|EMBL:AAW54628.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L2_057_000G1_scaffold_415_18
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

22466..24163
DNA (1698bp) protein (566aa)
Phosphate regulon sensor protein PhoR (EC:2.7.3.-)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Alkaline phosphatase synthesis sensor protein n=36 Tax=Staphylococcus epidermidis RepID=Q8CNX6_STAES
L2_057_000G1_scaffold_415_19
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

24377..27088
DNA (2712bp) protein (904aa)
DNA polymerase I n=2 Tax=Staphylococcus epidermidis RepID=V6QIB2_STAEP
DNA polymerase I
DNA polymerase I {ECO:0000313|EMBL:ESV20854.1}; TaxID=1344987 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis WI09.;"
L2_057_000G1_scaffold_415_20
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27104..27976
DNA (873bp) protein (291aa)
Formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|SAAS:SAAS00020852}; EC=3.2.2.- {ECO:0000256|SAAS:SAAS00275239};; EC=3.2.2.23 {ECO:0000256|SAAS:SAAS00020832};; EC=4.2.99.18 {ECO:0000256|SAAS:SAAS00054019};; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Formamidopyrimidine-DNA glycosylase n=53 Tax=Staphylococcus RepID=Q5HNL5_STAEQ
L2_057_000G1_scaffold_415_21
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27992..28603
DNA (612bp) protein (204aa)
Dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Dephospho-CoA kinase n=57 Tax=Staphylococcus epidermidis RepID=COAE_STAEQ
L2_057_000G1_scaffold_415_22
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

28958..29074
DNA (117bp) protein (39aa)
Uncharacterized protein n=31 Tax=Staphylococcus epidermidis RepID=Q8CS71_STAES
hypothetical protein
IS1272, transposase {ECO:0000313|EMBL:EES35865.1}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L2_057_000G1_scaffold_415_23
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

29447..30472
DNA (1026bp) protein (342aa)
Glyceraldehyde-3-phosphate dehydrogenase 2; Short=GAPDH 2;; EC=1.2.1.12;; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Glyceraldehyde-3-phosphate dehydrogenase 2 n=24 Tax=Staphylococcus epidermidis RepID=G3P2_STAEQ
gap; glyceraldehyde-3-phosphate dehydrogenase, type I
L2_057_000G1_scaffold_415_24
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

30992..31462
DNA (471bp) protein (157aa)
Transcriptional repressor NrdR n=75 Tax=Staphylococcus epidermidis RepID=NRDR_STAEQ
Ribonucleotide reductase transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=525376 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis W23144.;"
L2_057_000G1_scaffold_415_25
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

31463..32833
DNA (1371bp) protein (457aa)
Replication initiation and membrane attachment protein, DnaB/DnaD family n=7 Tax=Staphylococcus epidermidis RepID=C5Q9T5_STAEP
Helicase loader DnaB
Replication initiation and membrane attachment protein, DnaB/DnaD family {ECO:0000313|EMBL:EFE59859.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_057_000G1_scaffold_415_26
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

32833..33753
DNA (921bp) protein (307aa)
Primosomal protein DnaI n=46 Tax=Staphylococcus epidermidis RepID=Q5HNM0_STAEQ
Helicase loader DnaI
Primosomal protein DnaI {ECO:0000313|EMBL:AAW54612.1}; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
L2_057_000G1_scaffold_415_27
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

34106..36043
DNA (1938bp) protein (646aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00184}; Short=ThrRS {ECO:0000255|HAMAP-Rule:MF_00184};; TaxID=176279 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis (strain ATCC 35984 / RP62A).;"
Threonine--tRNA ligase n=17 Tax=Staphylococcus epidermidis RepID=SYT_STAEQ
L2_057_000G1_scaffold_415_28
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

36472..37974
DNA (1503bp) protein (501aa)
Amino acid permease family protein n=52 Tax=Staphylococcus epidermidis RepID=Q5HNM2_STAEQ
Lysine-specific permease
Amino acid permease {ECO:0000313|EMBL:EFE59862.1}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
L2_057_000G1_scaffold_415_29

Not on your lists

38182..38709
DNA (528bp) protein (176aa)
Translation initiation factor IF-3 n=81 Tax=Staphylococcus epidermidis RepID=IF3_STAEQ
Translation initiation factor 3
Translation initiation factor IF-3 {ECO:0000313|EMBL:ETJ18397.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L2_057_000G1_scaffold_415_30
Staphylococcus epidermidis, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


38737..38937
DNA (201bp) protein (67aa)
50S ribosomal protein L35 n=86 Tax=Staphylococcus RepID=RL35_STAEQ
LSU ribosomal protein L35p
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=525375 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus epidermidis M23864:W2(grey).;"
Displaying items 1-30 of 42 in total

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