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L2_057_000M1_scaffold_68

Search features with annotation key words

Displaying items 1-30 of 97 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000M1_scaffold_68_1
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2..1714)
DNA (1713bp) protein (571aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ABW6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87749.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_68_2
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2315..3310)
DNA (996bp) protein (332aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=K6BL44_9PORP
Glycosyl hydrolase family 43 {ECO:0000313|EMBL:CDD14122.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
1,4-beta-xylanase
L2_057_000M1_scaffold_68_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3327..4391)
DNA (1065bp) protein (355aa)
Arabinan endo-1,5-alpha-L-arabinosidase n=2 Tax=Parabacteroides merdae RepID=A7ABW3_9PORP
Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:EDN87746.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_68_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4478..6319)
DNA (1842bp) protein (614aa)
SusD family protein n=2 Tax=Parabacteroides merdae RepID=A7ABW2_9PORP
SusD family protein {ECO:0000313|EMBL:EDN87745.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
SusD family.
L2_057_000M1_scaffold_68_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6339..9848)
DNA (3510bp) protein (1170aa)
TonB-linked outer membrane protein, SusC/RagA family n=2 Tax=Parabacteroides merdae RepID=A7ABW1_9PORP
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:EDN87744.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
TonB-dependent Receptor Plug Domain./TonB dependent receptor.
L2_057_000M1_scaffold_68_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10076..10252)
DNA (177bp) protein (59aa)
Sigma factor regulatory protein, FecR/PupR family n=3 Tax=Parabacteroides RepID=A7ABW0_9PORP
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EDN87743.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L2_057_000M1_scaffold_68_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10258..11100)
DNA (843bp) protein (281aa)
Sigma factor regulatory protein, FecR/PupR family n=3 Tax=Parabacteroides RepID=A7ABW0_9PORP
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EDN87743.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative anti sigma factor
L2_057_000M1_scaffold_68_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11217..11801)
DNA (585bp) protein (195aa)
RNA polymerase sigma-70 factor n=4 Tax=Parabacteroides RepID=A7ABV9_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:CDD14117.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
RNA polymerase ECF-type sigma factor
L2_057_000M1_scaffold_68_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11954..12307
DNA (354bp) protein (118aa)
Thioredoxin n=4 Tax=Parabacteroides RepID=A7ABV7_9PORP
Thioredoxin {ECO:0000313|EMBL:EKN10844.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
thioredoxin
L2_057_000M1_scaffold_68_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12360..15848)
DNA (3489bp) protein (1163aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7ABV6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87739.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_68_11
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15878..16546)
DNA (669bp) protein (223aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ABV5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87738.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_68_12
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16647..16889
DNA (243bp) protein (81aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7ABV4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14114.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L2_057_000M1_scaffold_68_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16880..17194
DNA (315bp) protein (105aa)
Plasmid stabilization system protein, RelE/ParE family n=3 Tax=Parabacteroides RepID=A7ABV3_9PORP
Plasmid stabilization system protein RelE/ParE family {ECO:0000313|EMBL:CDD14113.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L2_057_000M1_scaffold_68_14
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17318..18340
DNA (1023bp) protein (341aa)
PhoH family protein n=4 Tax=Parabacteroides RepID=A7ABV2_9PORP
PhoH family protein {ECO:0000313|EMBL:CDD14112.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
phosphate starvation-inducible protein PhoH
L2_057_000M1_scaffold_68_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18362..19309
DNA (948bp) protein (316aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002696}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002685};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=4 Tax=Parabacteroides RepID=A7ABV1_9PORP
L2_057_000M1_scaffold_68_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19321..20088
DNA (768bp) protein (256aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Demethylmenaquinone methyltransferase n=2 Tax=Parabacteroides merdae RepID=A7ABV0_9PORP
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase
L2_057_000M1_scaffold_68_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20110..20850
DNA (741bp) protein (247aa)
Shikimate 5-dehydrogenase n=3 Tax=Parabacteroides merdae RepID=K5YBU1_9PORP
Putative shikimate dehydrogenase {ECO:0000313|EMBL:EDN87732.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
shikimate 5-dehydrogenase
L2_057_000M1_scaffold_68_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20938..21543)
DNA (606bp) protein (202aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7ABU8_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87731.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
siderophore biosynthesis regulatory protein
L2_057_000M1_scaffold_68_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21555..22130)
DNA (576bp) protein (192aa)
Gliding motility-associated lipoprotein GldD n=3 Tax=Parabacteroides RepID=K5ZPG7_9PORP
Putative gliding motility-associated lipoprotein GldD {ECO:0000313|EMBL:EDN87730.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_68_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22130..23470)
DNA (1341bp) protein (447aa)
Gliding motility-associated protein GldE n=3 Tax=Parabacteroides merdae RepID=A7ABU6_9PORP
Gliding motility-associated protein GldE {ECO:0000313|EMBL:EDN87729.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hemolysin-like protein
L2_057_000M1_scaffold_68_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23496..23999)
DNA (504bp) protein (168aa)
Single-stranded DNA-binding protein n=3 Tax=Parabacteroides RepID=A7ABU5_9PORP
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
ssDNA-binding protein
L2_057_000M1_scaffold_68_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24042..25271)
DNA (1230bp) protein (410aa)
A/G-specific adenine glycosylase n=2 Tax=Parabacteroides merdae RepID=A7ABU4_9PORP
A/G-specific adenine glycosylase {ECO:0000313|EMBL:EDN87727.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
A/G-specific adenine glycosylase
L2_057_000M1_scaffold_68_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25320..25592
DNA (273bp) protein (91aa)
DNA-binding protein HU n=7 Tax=Parabacteroides RepID=A7ABU3_9PORP
DNA-binding protein HU {ECO:0000313|EMBL:EDN87726.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
DNA-binding protein HU
L2_057_000M1_scaffold_68_24
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

25821..27401
DNA (1581bp) protein (527aa)
S1 RNA binding domain protein n=3 Tax=Parabacteroides RepID=A7ABU2_9PORP
S1 RNA binding domain protein {ECO:0000313|EMBL:CDD14102.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
ribonuclease G
L2_057_000M1_scaffold_68_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

27462..28478
DNA (1017bp) protein (339aa)
Endonuclease/exonuclease/phosphatase family protein n=2 Tax=Parabacteroides merdae RepID=A7ABU1_9PORP
Endonuclease/exonuclease/phosphatase family protein {ECO:0000313|EMBL:EDN87724.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
putative endonuclease/exonuclease/phosphatase family protein
L2_057_000M1_scaffold_68_26
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28497..29063)
DNA (567bp) protein (189aa)
RNA polymerase sigma-70 factor n=3 Tax=Parabacteroides merdae RepID=A7ABU0_9PORP
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:EDN87723.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_68_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29193..29291)
DNA (99bp) protein (33aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7ABT9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN87722.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L2_057_000M1_scaffold_68_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29498..30385
DNA (888bp) protein (296aa)
Sigma factor regulatory protein, FecR/PupR family n=3 Tax=Parabacteroides merdae RepID=A7ABT7_9PORP
Sigma factor regulatory protein, FecR/PupR family {ECO:0000313|EMBL:EDN87720.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
anti-sigma factor
L2_057_000M1_scaffold_68_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30562..33948
DNA (3387bp) protein (1129aa)
TonB-linked outer membrane protein, SusC/RagA family n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7ABT6_9PORP
TonB-linked outer membrane protein, SusC/RagA family {ECO:0000313|EMBL:EDN87719.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
TonB-dependent receptor
L2_057_000M1_scaffold_68_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33960..35738
DNA (1779bp) protein (593aa)
SusD family protein n=2 Tax=Parabacteroides merdae RepID=A7ABT5_9PORP
SusD family protein {ECO:0000313|EMBL:EDN87718.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
RagB/SusD domain-containing protein
Displaying items 1-30 of 97 in total

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