ggKbase home page

L2_057_000M1_scaffold_145

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_057_000M1_scaffold_145_1
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2..985
DNA (984bp) protein (328aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=537006 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii DSM 18315.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=5 Tax=Parabacteroides RepID=A7AJZ4_9PORP
L2_057_000M1_scaffold_145_2
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


994..1485
DNA (492bp) protein (164aa)
50S ribosomal protein L17 n=3 Tax=Parabacteroides merdae RepID=A7AJZ5_9PORP
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
rplQ; 50S ribosomal protein L17
L2_057_000M1_scaffold_145_3
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1569..1739)
DNA (171bp) protein (57aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7AJZ6_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84897.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L2_057_000M1_scaffold_145_4
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1922..2392)
DNA (471bp) protein (157aa)
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AJZ7_9PORP
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase {ECO:0000313|EMBL:EDN84898.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
glycoside hydrolase
L2_057_000M1_scaffold_145_5
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2389..2832)
DNA (444bp) protein (148aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=K6A7F9_9PORP
Putative DNA-binding protein {ECO:0000313|EMBL:EDN84899.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_145_6
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3034..3270
DNA (237bp) protein (79aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AJZ9_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84900.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_145_7
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3346..5709
DNA (2364bp) protein (788aa)
VirE N-terminal domain protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AK00_9PORP
VirE N-terminal domain protein {ECO:0000313|EMBL:EDN84901.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_145_8
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5660..5914
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6AUA3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD13994.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
L2_057_000M1_scaffold_145_9
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

6261..9254
DNA (2994bp) protein (998aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae ATCC 43184 RepID=A7AK03_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84904.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_145_10
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9596..10495)
DNA (900bp) protein (300aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AK04_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84905.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_145_11
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10784..12067
DNA (1284bp) protein (428aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
eno; phosphopyruvate hydratase (EC:4.2.1.11)
Enolase n=4 Tax=Parabacteroides RepID=A7AK07_9PORP
L2_057_000M1_scaffold_145_12
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(12140..14821)
DNA (2682bp) protein (894aa)
Calcium-translocating P-type ATPase, PMCA-type n=2 Tax=Parabacteroides merdae RepID=A7AK08_9PORP
Calcium-translocating P-type ATPase, PMCA-type {ECO:0000313|EMBL:EDN84909.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
transmembrane calcium-transporting ATPase
L2_057_000M1_scaffold_145_13
Parabacteroides merdae CAG:48, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15032..15529
DNA (498bp) protein (166aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AK09_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDD14733.1}; TaxID=1263094 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides merdae CAG:48.;"
hypothetical protein
L2_057_000M1_scaffold_145_14
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15489..16445)
DNA (957bp) protein (319aa)
Radical SAM protein, TIGR01212 family n=2 Tax=Parabacteroides merdae RepID=A7AK10_9PORP
Radical SAM protein, TIGR01212 family {ECO:0000313|EMBL:EDN84912.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_145_15
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16531..18705
DNA (2175bp) protein (725aa)
Peptidase, S9A/B/C family, catalytic domain protein n=2 Tax=Parabacteroides merdae RepID=A7AK11_9PORP
Peptidase, S9A/B/C family, catalytic domain protein {ECO:0000313|EMBL:EDN84911.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
dipeptidyl aminopeptidase IV
L2_057_000M1_scaffold_145_16
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18712..19557
DNA (846bp) protein (282aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Lipoyl synthase n=3 Tax=Parabacteroides merdae RepID=A7AK12_9PORP
lipoyl synthase
L2_057_000M1_scaffold_145_17
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19619..20740
DNA (1122bp) protein (374aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AK13_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84914.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_145_18
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20814..21308)
DNA (495bp) protein (165aa)
Phosphodiesterase family protein n=3 Tax=Parabacteroides RepID=A7AK14_9PORP
Phosphodiesterase family protein {ECO:0000313|EMBL:EDN84915.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
phosphoesterase
L2_057_000M1_scaffold_145_19
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21367..23436
DNA (2070bp) protein (690aa)
Polyphosphate kinase {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191}; EC=2.7.4.1 {ECO:0000256|RuleBase:RU003800, ECO:0000256|SAAS:SAAS00008191};; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=2 Tax=Parabacteroides merdae RepID=A7AK15_9PORP
L2_057_000M1_scaffold_145_20
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23442..24107
DNA (666bp) protein (222aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AK16_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84917.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_145_21
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

24298..25191
DNA (894bp) protein (298aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AK17_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84918.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_145_22
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25365..27116)
DNA (1752bp) protein (584aa)
Uncharacterized protein n=3 Tax=Parabacteroides merdae RepID=A7AK18_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84919.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_145_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27113..27382)
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AK19_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84920.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L2_057_000M1_scaffold_145_24
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27379..27843)
DNA (465bp) protein (155aa)
Uncharacterized protein n=2 Tax=Parabacteroides merdae RepID=A7AK20_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84921.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
L2_057_000M1_scaffold_145_25
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28069..29466)
DNA (1398bp) protein (466aa)
NOL1/NOP2/sun family protein n=3 Tax=Parabacteroides merdae RepID=A7AK21_9PORP
NOL1/NOP2/sun family protein {ECO:0000313|EMBL:EDN84922.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
tRNA and rRNA cytosine-C5-methylase
L2_057_000M1_scaffold_145_26
Parabacteroides johnsonii CAG:246, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29600..30301
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Parabacteroides merdae CL09T00C40 RepID=K6BH04_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CCX76858.1}; TaxID=1263091 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides johnsonii CAG:246.;"
hypothetical protein
L2_057_000M1_scaffold_145_27
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

30302..30877
DNA (576bp) protein (192aa)
Bacterial transferase hexapeptide repeat protein n=2 Tax=Parabacteroides merdae RepID=A7AK24_9PORP
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:EDN84925.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hexapeptide transferase acetyltransferase
L2_057_000M1_scaffold_145_28
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30905..31762)
DNA (858bp) protein (286aa)
Nicotinate-nucleotide diphosphorylase (Carboxylating) n=3 Tax=Parabacteroides merdae RepID=A7AK25_9PORP
Nicotinate-nucleotide diphosphorylase (Carboxylating) {ECO:0000313|EMBL:EKN11630.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
nicotinate-nucleotide pyrophosphorylase
L2_057_000M1_scaffold_145_29
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31823..32194)
DNA (372bp) protein (124aa)
Uncharacterized protein n=3 Tax=Parabacteroides RepID=A7AK26_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EDN84927.1}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
hypothetical protein
L2_057_000M1_scaffold_145_30
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

32285..32758
DNA (474bp) protein (158aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=411477 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae ATCC 43184.;"
Ribosomal RNA large subunit methyltransferase H n=3 Tax=Parabacteroides merdae RepID=A7AK27_9PORP
rRNA large subunit methyltransferase
Displaying items 1-30 of 61 in total

View Taxonomy